Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00221 ACGATTCAATCGGCTGTAGCAAAATCAGAGCAGCGATCGATTGAAGAATGTGGAAAAGAGCTGTGTGTTCGATTCCTCGCAGAAGTCTCATCGCTCTACTCCTTCCTCCAACCCTCCCTCTTCGCCCCAAAGCGAGCACCATTTTCGCCATCTCAAGAATCCACCGACCTCCGTCAGAATCAAACTCCTCAAATTTTGACTACAGACCGTGTCGCCGCCGTAGAAACGACGCTCCACAACTCCCTTCTCACCAGCGACACTGACGAGGCATGGAAATCCTTCAAACTGCTCACGAAAAGCTCCGGGCTTGAACAGAAGATAATCGAGTTAAAACGTTTGATGGGAAGTTTTGGTTTTGCATCTAAGAGTCTGTTCTTTAATAATTTGGTAAGTGGATACGGTAATTCGGGCGACTTAGCTGCTGTTTCGAAGACTATGTTGGATGGTTTGAAAGATGAATGTGGAGAACATGTAAGATTTGAGGAAAAAACGTATTTGGAAGTGGTTAAGGCTTTTGTTCAGAGTGGAAATCTGAAGGAATTATCTTCATTGATTGTTGATGCTCAGAATTTAGAATCTTCAACGGACGTCGATGGATCGATTGGATTCGGTATCATTAATGCTTGTGTTAATATTGGATGGTTAGATAATGTGCATGCCATTCTGAAAGAAATCAATTCCCAGGGAGTTTCTGTAGGCCTTGGAGTCTATATGCCAATCCTGAAGGCGTACCAGAAGGAGCGTCGAACAGCTGAAGCCACCCAATTAATCATGGATGTTAGCAGTTCCGGGCTACAGTTGGATGCAGAAACTTTTGATGCTCTTATAGAAGCATCGATGTCGAATCAAGATTTTCAGTCGGCTTTCGCTTTGTTCAGGAAAATGAGGGAAACGAGAAAATCCAACACGAACGCTAGCTATCTAACTATTATGACTGGCTTAATGGAGAGCCATAGGCCTGAGTTGATGGCTGCCTTCTTAGACGAAGTTGTCGAGGATCCTCTCGTTGAAGTTGGAACTCATGATTGGAACTCTATTATACATGCCTTTTGCAAAGCTGGAAGGCTCGAGGATGCAAGAAGAACGTTTCGAAGAATGAAGTTTCTGCAGTTTGAACCGAACGAACAAACGTTCTTGTCTCTAATTAATGGCTATGTGTCGGGAGAGAGATATTTCTGTGTTTTGATGCTGTGGAATGAACTTAAGTGGAAGATTACTGCAAATGGGGAGAGAGGTTTCAAACTCGATAGCAACTTGGTTGACGCGTTCTTGTATGCTTTGGTCAAGGGAGGTTTCTTCGACGCCGTGATGCAAGTTGTCGAAAAAACTAAGGATACGAAGACCTTCGTCGATAAGTGGAAATATAAGCAAGCATTCATGGAGACTCATAAGAAACTCAAAGTGGCAAAATTGAGGAGGAGGAACCACAGGAAAATGCAATCACTTATTGATTTCAAGAACTGGGTTGGTTTGAATGCTTGA 1482 43.32 TIQSAVAKSEQRSIEECGKELCVRFLAEVSSLYSFLQPSLFAPKRAPFSPSQESTDLRQNQTPQILTTDRVAAVETTLHNSLLTSDTDEAWKSFKLLTKSSGLEQKIIELKRLMGSFGFASKSLFFNNLVSGYGNSGDLAAVSKTMLDGLKDECGEHVRFEEKTYLEVVKAFVQSGNLKELSSLIVDAQNLESSTDVDGSIGFGIINACVNIGWLDNVHAILKEINSQGVSVGLGVYMPILKAYQKERRTAEATQLIMDVSSSGLQLDAETFDALIEASMSNQDFQSAFALFRKMRETRKSNTNASYLTIMTGLMESHRPELMAAFLDEVVEDPLVEVGTHDWNSIIHAFCKAGRLEDARRTFRRMKFLQFEPNEQTFLSLINGYVSGERYFCVLMLWNELKWKITANGERGFKLDSNLVDAFLYALVKGGFFDAVMQVVEKTKDTKTFVDKWKYKQAFMETHKKLKVAKLRRRNHRKMQSLIDFKNWVGLNA 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1271822 1274675 + Cp4.1LG09g02090.1 Cpe09g00221 474587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00221 493 Pfam Pentatricopeptide repeat domain 256 308 IPR002885 -
Cpe09g00221 493 TIGRFAM PPR: pentatricopeptide repeat domain 343 375 IPR002885 -
Cpe09g00221 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 373 IPR002885 -
Cpe09g00221 493 PANTHER BNAC05G43320D PROTEIN 101 493 - -
Cpe09g00221 493 PANTHER OS01G0788900 PROTEIN 101 493 - -
Cpe09g00221 493 Gene3D Tetratricopeptide repeat domain 203 304 IPR011990 GO:0005515
Cpe09g00221 493 Pfam PPR repeat family 343 386 IPR002885 -
Cpe09g00221 493 PANTHER BNAC05G43320D PROTEIN 27 101 - -
Cpe09g00221 493 PANTHER OS01G0788900 PROTEIN 27 101 - -
Cpe09g00221 493 Gene3D Tetratricopeptide repeat domain 305 491 IPR011990 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00221 Cpe-Chr9:1271822 Cpe17g00863 Cpe-Chr17:6685827 5.57E-67 dispersed
Cpe09g00221 Cpe-Chr9:1271822 Cpe03g00159 Cpe-Chr3:803365 6.54E-34 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00221 - - csv:101212045 671.774