Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00222 ATGGCAGCGACGGGTAGAAGTGAAAGAAGTTCGCGTTCAACAGCAGAACAACAGCGACGGGTAGATTTTAGTGGTTGTGTTCGTCCTGAAGGTACTCCTAGGGAAGGGTTCTCATCGCCTTTAAATTTGTTGGAATTGCCAAGTATCGTTCAAATTGACGCAAATGTTATACGATCTGAAGCAGGCACGATTTGTTTGGGAAATCCCGATCGTGGTCTCTACCCGGTTGAATTTAAGGATGATGAGAGCGATGTTTCCAGCGTATATTCTTCCAAATCAGAGGAGAGTTGCGGTTCTCAAGGTCCCGCTTCTCCATCCCAAGTTTTTGATATTACCCCCAAGTCCGGTGGAGATGTTCTGTCTCCAACTCAATCCCCTCCTCTTCAGACGATGGATCGTGTGGGAGGAAATGAACCATATGATCCATTTAGAATCCCATCTGCAGTTTTCCAAACAAGTAGATCAATCAGCCAATTGGAATGGAGTATTGGTTCAAATGAGTCCTTGTTTAGCATTAATGTCGGAAACAATAGTTTCTCTAGAGATCATATGTTGATGTTGAGTGATTCGCAGAAGTCTAGCGAGTTAACAAAATCAGGCGAGTTGTTTGTGTTTAAACCACCACCTGTAGTTACCACATCGAGAGAAACTGAAGTGGCGAGTGTTGAACTCGAAGAGGAGCCTACAATGGCAGATACCACAGAATATGACATTAAGGACAAAGGGTCTTCGGTTGCCGAAGATCTTAGTGTAAGAAGCGAGCCTACTCCTGCGGTATCATGGAATTCCTCTAGCAAATCTTGCCGCTCCGGTGGAAGCCAAAGCAGCTCAAATTCCTTCGCTTTCCCCATTTTGGCCGATGAGGAGGTGCAGGGTGGATCTGTGGCTGTGGATGCTAAAAAGAAGCATCAAAATACTCAAAGCACTGCTGTCTCTTTAAAATCAACAGCGACGTCTCGACTTCCCTGCTGTTCATTTTCTGTTCATGTTCTTGTCGCAAATGGAGTTGCTGTTCATCTTCTTGTTGCAAATGGGGTTGCTCTTCATCTTCTTGTTGCAAATGGGGCTGCTCTTCATCTTCTTGTTGCAAATGGGGCTGCTCTTCATCTTCTTGTTGCAAATGGGGCTGCTCTTCATCTTCTTGTTGCAAATGGGGCTGCTCTTCATCTTCTTGTTGCAAATGGGGCTGCTCTTCATCTTCTTGTTGCAAATGGGGCTGCTCTTCATCTTCTTGTTGCAAATGGGGCTGCTCTTCATCTTCTTGTTGCAAATGGGGCTGCTCTTCATCTTCTTGTTGCAAATGGGGCTGCTCTTCATCTTCTTGTTGCAAATGGGGCTGCTCTTCATCTTCTTGTTGCAAATGGGGCTGCCCTTCATCTTCTTGTTGCAAATGGGGCTGCTCTTCATGCTCTTGTTGCAAATGGGGTTGCTCTTCATGTTCATGTCGCAAATGGGATTGCTGTTCATGTTCTTCTTGTTGCCAACGGGATTGCTGTTCATGATTTGCATTCTAGAAAAGCGTTGTTCGATTAG 1533 45.27 MAATGRSERSSRSTAEQQRRVDFSGCVRPEGTPREGFSSPLNLLELPSIVQIDANVIRSEAGTICLGNPDRGLYPVEFKDDESDVSSVYSSKSEESCGSQGPASPSQVFDITPKSGGDVLSPTQSPPLQTMDRVGGNEPYDPFRIPSAVFQTSRSISQLEWSIGSNESLFSINVGNNSFSRDHMLMLSDSQKSSELTKSGELFVFKPPPVVTTSRETEVASVELEEEPTMADTTEYDIKDKGSSVAEDLSVRSEPTPAVSWNSSSKSCRSGGSQSSSNSFAFPILADEEVQGGSVAVDAKKKHQNTQSTAVSLKSTATSRLPCCSFSVHVLVANGVAVHLLVANGVALHLLVANGAALHLLVANGAALHLLVANGAALHLLVANGAALHLLVANGAALHLLVANGAALHLLVANGAALHLLVANGAALHLLVANGAALHLLVANGAALHLLVANGAALHLLVANGAALHALVANGVALHVHVANGIAVHVLLVANGIAVHDLHSRKALFD 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1276254 1278904 + Cp4.1LG09g02120.1 Cpe09g00222 474588

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00222 510 MobiDBLite consensus disorder prediction 1 40 - -
Cpe09g00222 510 PANTHER SUPPRESSOR SRP40-LIKE PROTEIN 78 320 - -
Cpe09g00222 510 MobiDBLite consensus disorder prediction 85 131 - -
Cpe09g00222 510 MobiDBLite consensus disorder prediction 235 274 - -
Cpe09g00222 510 PANTHER - 78 320 - -
Cpe09g00222 510 MobiDBLite consensus disorder prediction 89 131 - -
Cpe09g00222 510 MobiDBLite consensus disorder prediction 255 274 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00222 - - - mcha:111017534 330.872
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01506 Cpe09g00222 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01508 Cpe-Chr1:8993025 Cpe09g00222 Cpe-Chr9:1276254 1.41E-06 transposed
Cpe01g01506 Cpe-Chr1:8991372 Cpe09g00222 Cpe-Chr9:1276254 2.14E-102 wgd
Cpe13g00984 Cpe-Chr13:8135356 Cpe09g00222 Cpe-Chr9:1276254 2.60E-10 wgd
Cpe18g00708 Cpe-Chr18:6984738 Cpe09g00222 Cpe-Chr9:1276254 6.85E-15 wgd
Cpe04g01459 Cpe-Chr4:11636350 Cpe09g00222 Cpe-Chr9:1276254 1.19E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g35 . . . . . Bpe10g00899 . Bma15g00132 Cmo04g01788 Cmo18g01125 . Cma18g01104 . Car18g01018 . Cpe09g00222 Cpe01g01506 Bhi07g01487 . . . . . . Cla05g02391 Cam05g2568 Cec05g2601 . . . Cre05g2539 . . . . . Csa05g02515 Chy10g01059 Cme10g00356 Blo06g00927 . . . . . . . . . . Cma04g01703 . Car04g01738 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009041 1 3 1 1 1 1 2 0 1 1 1 0 2 1 1 2 0 0 2 1 1 1 1 1 1 0 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00222 Cpe_Chr09 FPKM 11.973665 14.058263 26.876305 25.945 50.532509 48.564594 51.844482 25.265615 25.027716 25.717558