Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00224 ATGGATCCCCCACCCTCCTACCGCAGTCGCAGACTCACCAACAAACCTCAGCTATACTCCACAGTTGTCATCCATTCCAATTCTGATTCAGACGCCGACAACAAACCTTCCGATCGGAGACTTCAGCGCCGACGAAGACCGCCGAGCGAAGGTCAAGACCTATACGCCACAATGGTCTATAAGGACGTTGATAAGGGCCACGAGGACGAGGATGATGATGATTCGTCTCTCCCACCTCTCCTCAAACGTCTTCCAAAGGATTTCGGGGGTGGAGCCCCAATTGACTACAACGACGACGAAGATTTTGGATTTGATCACGATACTGAAGATTTTGGTACGGTGATCGTCAAAACAGGAAGGAGTCGCCCTCTTAATCGTTCTTTGTCTTCATCAGTTTCGGCGAAGCCTCGAAGTTCGGCGTTGCCATCCGTGAACTTTCAGACGGGGAGCTCCGGGACGAGATCAGGCGGTAGAGATGGTAGCGAGGAAGGCGATGTGAGCGAGGAAGATGATGGTGATGGGTATTCGACGTTCGTGGTGAAGCCCTCGGCGAGGTCGCGGAACAGAGAATCTGTTAGTGACACCATTCTTCGAAGGAGCGTTGCTAGTCGTAGTGATACCAGAGATGGAGGCGGAGGACTTGAGGGGTCCACGTTGGGCAGAGCGGTGGCGAGCATGCAAGGAATGGGAGACTTAGGGTTTGGGAAGCAGAGGAAGGGGAATGGATCGCCGAAGAGTGAGGAAGGCGGTGGTCGGATGCGCAGTAAGGTATCCACGAGTTCGATTCCTGAAAGCATCACCAGGGAAGATCCAAATACCAAGTATGAATTGCTCAACGAACTCGGAAAGGGGTCTTATGGGGCTGTTTATAAAGCAAGAGATATTAAGACCTCTGAGCTTGTTGCTATCAAGGTCATTTCTTTGTGTGAAGGGGAGGAAGGATATGAAGAAATTCGTGGTGAAATCGAGATGTTGCAGCAGTGCAGTCATCCAAACGTTGTCCGCTATCTTGGGAGCTATCAAGGAGAGGAGTATCTATGGATAGTAATGGAGTACTGTGGGGGTGGCAGTGTTGCTGACTTGATGAATGTTACAGAAGAAGCACTAGAGGAATATCAGATAGCATATATCTGTAGGGAGGCATTGAAGGGCCTCACTTATCTTCATTCGATTTTCAAAGTACATAGAGATATCAAGGGCGGCAATATTTTGTTAACCGAACAAGGAGATGTCAAGTTGGGTGATTTTGGAGTTGCAGCCCAGCTAACTAGGACCATGTCAAAGCGCAATACATTCATTGGCACTCCCCACTGGATGGCTCCAGAAGTTATTCAGGAAAGTCGATACGATGGGAAGGTGGATGTGTGGGCTCTTGGTGTTTCTGCTATCGAAATGGCTGAGGGACTTCCTCCAAGATCAGCCGTGCATCCAATGAGGGTTTTATTCATGATATCCATTGAGCCAGCTCCAATGCTTGAAGACAAAGAAAAATGGTCCTTGTTGTTCCACGATTTTGTTGCAAAGTGTCTGACAAAAGATCCCCGTTCACGTCCTGCTGCTTCTGAGATGTTGAAGCACAAATTCATTGAGAAATGCAGATGTGGCGCATCAGCAATGTTGCCGAAGATTGAAAAGGCAAGGAAAATCAGGACTTTGTTGATGGCTCAGGAAGCTCGTAGTGTTCCTCCAGATGCGTCAGGAGATGGTACTATAGTAGCTGCAAAGTTGAATCAAAACTATGGAGATACTGTTCCTTCAAAACCTCAGAATGTTGGACTTCAGGTAGCAAATGAAATGTCATGGAGGAAGCAAGAGCAATCGGGTGTAGAAGCCGAAGGTAATGTGGATGTCATTCCAACTGCACCAACACTAACAATAGGTACTTTTGGCACTATGATAGTCCATGATGGAGATGAAAATGATAAGGTGGCCTCTCGACTGGATACTGGCAATGCTGTAGCACCAACTGGTCCTTCAAGCAATGAGAGCCAATCCGTTGGTGTAACTGGAGTCAAAATTGTGGACTCTAGTGTGGTGGATCGTACGGGAGGTATTGCTAGTAATAATCTTGATGGAAAATCAGATCCTGCCATTCCTGCATCTTCCCCTTCATTTTTGGGTATTCATGAGCTTAGCACGTTGGAAAATGAAACTGTCAGCCGGAAATCTTTTGCTCTGCAGGATAAGCTTTGGTCCATTTATGCAGCGGGTAACACTGTACCCATTCCATTCTTGCGAGCTACTGATATATCCCCCATTGCTTTGTTATCTGACAATGTTCTTGGAGGCATGCAACAAGATAACAGGGGTACTGTAGCAGTGGAAACGCTTCAGGAACTCTTCACCGGTGATGGACAATCAAAAAAGGGTCGCAGGGGACAAAATGAGATGCCCCTTCCATCCAGTGTTTATCAAAGACTTACTTCAAGTCCGACCCTATTGAACCTTGCCCAGGCTTTAGCTTACCACAGAATGTGTTATGAAGATATGCCGCTTCAGGAGTTGCAGGCGACTCAAGAACAACAAACCATCCAAAATCTTTGTGATACACTTAGAACTATCCTTCGATTGTAG 2574 47.2 MDPPPSYRSRRLTNKPQLYSTVVIHSNSDSDADNKPSDRRLQRRRRPPSEGQDLYATMVYKDVDKGHEDEDDDDSSLPPLLKRLPKDFGGGAPIDYNDDEDFGFDHDTEDFGTVIVKTGRSRPLNRSLSSSVSAKPRSSALPSVNFQTGSSGTRSGGRDGSEEGDVSEEDDGDGYSTFVVKPSARSRNRESVSDTILRRSVASRSDTRDGGGGLEGSTLGRAVASMQGMGDLGFGKQRKGNGSPKSEEGGGRMRSKVSTSSIPESITREDPNTKYELLNELGKGSYGAVYKARDIKTSELVAIKVISLCEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTEEALEEYQIAYICREALKGLTYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSAVHPMRVLFMISIEPAPMLEDKEKWSLLFHDFVAKCLTKDPRSRPAASEMLKHKFIEKCRCGASAMLPKIEKARKIRTLLMAQEARSVPPDASGDGTIVAAKLNQNYGDTVPSKPQNVGLQVANEMSWRKQEQSGVEAEGNVDVIPTAPTLTIGTFGTMIVHDGDENDKVASRLDTGNAVAPTGPSSNESQSVGVTGVKIVDSSVVDRTGGIASNNLDGKSDPAIPASSPSFLGIHELSTLENETVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIALLSDNVLGGMQQDNRGTVAVETLQELFTGDGQSKKGRRGQNEMPLPSSVYQRLTSSPTLLNLAQALAYHRMCYEDMPLQELQATQEQQTIQNLCDTLRTILRL 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1284728 1294294 + Cp4.1LG09g02300.1 Cpe09g00224 474590

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00224 857 SMART serkin_6 275 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe09g00224 857 ProSiteProfiles Protein kinase domain profile. 275 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe09g00224 857 Gene3D Transferase(Phosphotransferase) domain 1 271 559 - -
Cpe09g00224 857 SUPERFAMILY Protein kinase-like (PK-like) 273 530 IPR011009 -
Cpe09g00224 857 MobiDBLite consensus disorder prediction 24 268 - -
Cpe09g00224 857 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 217 847 - -
Cpe09g00224 857 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 217 847 - -
Cpe09g00224 857 MobiDBLite consensus disorder prediction 253 268 - -
Cpe09g00224 857 CDD STKc_MAP4K3_like 274 529 - -
Cpe09g00224 857 MobiDBLite consensus disorder prediction 31 50 - -
Cpe09g00224 857 Pfam Protein kinase domain 275 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe09g00224 857 MobiDBLite consensus disorder prediction 120 157 - -
Cpe09g00224 857 ProSitePatterns Protein kinases ATP-binding region signature. 281 304 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00224 - - - csv:101209775 1340.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00695 Cpe-Chr2:4370141 Cpe09g00224 Cpe-Chr9:1284728 1.80E-59 dispersed
Cpe09g00224 Cpe-Chr9:1284728 Cpe13g00900 Cpe-Chr13:7689434 2.25E-52 dispersed
Cpe09g00224 Cpe-Chr9:1284728 Cpe06g00678 Cpe-Chr6:4198781 1.16E-79 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g25 Blo01g00457 . . . . . . . . Cmo18g01122 . Cma18g01102 . Car18g01016 . Cpe09g00224 . . . . . . . . . . . . . . . Cone13ag0901 Cone19ag0899 . . . . . . . . . . . . Bma01g00127 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe06g00678 CST 1 711 MAP Kinase Kinase Kinase Kinase AT1G53165 59.1 1.4e-213 740.0
Cpe02g00695 CST 1 656 MAP Kinase Kinase Kinase Kinase AT1G53165 53.8 6.5e-187 651.4
Cpe06g00678 CST 1 710 MAP Kinase Kinase Kinase Kinase AT3G15220 60.9 2.0e-220 762.7
Cpe02g00695 CST 1 655 MAP Kinase Kinase Kinase Kinase AT3G15220 55.3 3.4e-191 665.6
Cpe09g00224 . 268 533 MAP Kinase Kinase Kinase Kinase AT3G15220 50.9 1.4e-67 255.0
Cpe09g00224 . 4 857 MAP Kinase Kinase Kinase Kinase AT1G69220 57.9 9.2e-241 830.5
Cpe06g00678 CST 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 52.6 9.4e-68 255.8
Cpe13g00900 CCT,ECH 1 623 MAP Kinase Kinase Kinase Kinase AT5G14720 59.7 2.9e-216 748.8
Cpe01g02349 CCT,ECH 1 623 MAP Kinase Kinase Kinase Kinase AT5G14720 58.0 6.3e-211 731.1
Cpe08g00913 CCT 7 745 MAP Kinase Kinase Kinase Kinase AT4G24100 62.3 2.4e-240 828.9
Cpe14g01014 CCT 7 844 MAP Kinase Kinase Kinase Kinase AT4G24100 51.9 1.2e-210 730.3
Cpe08g00913 CCT 11 746 MAP Kinase Kinase Kinase Kinase AT4G10730 62.0 4.8e-238 821.2
Cpe14g01014 CCT 11 844 MAP Kinase Kinase Kinase Kinase AT4G10730 52.4 6.3e-214 741.1
Cpe08g00913 CCT 5 364 MAP Kinase Kinase Kinase Kinase AT1G70430 57.5 1.4e-116 417.5
Cpe14g01014 CCT 226 507 MAP Kinase Kinase Kinase Kinase AT1G70430 59.4 1.0e-95 348.2
Cpe13g00900 CCT,ECH 1 249 MAP Kinase Kinase Kinase Kinase AT1G23700 61.9 6.4e-80 295.4
Cpe01g02349 CCT,ECH 6 249 MAP Kinase Kinase Kinase Kinase AT1G23700 61.9 3.0e-77 286.6
Cpe08g00913 CCT 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.9 8.9e-74 275.0
Cpe03g01498 . 32 509 MAP Kinase Kinase Kinase Kinase AT4G14480 57.1 2.8e-144 509.2
Cpe13g00900 CCT,ECH 5 249 MAP Kinase Kinase Kinase Kinase AT4G14480 50.4 8.7e-69 258.5
Cpe01g02349 CCT,ECH 5 249 MAP Kinase Kinase Kinase Kinase AT4G14480 50.4 1.4e-66 251.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003387 1 1 1 1 1 2 1 2 3 0 3 2 1 1 1 1 3 2 1 3 1 3 1 1 1 2 1 1 4 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62589 PF00069 Pkinase 8.00E-68 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00224 Cpe_Chr09 FPKM 3.265583 2.856343 1.281244 1.330569 0.548999 0.541857 0.514187 0.10576 0.217397 0.337541