Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00228 GGTTTGTCTGGTGGAGGTGATGGGTCTGCAAAAGTGCAGTGCAGACAACAACACTTAATGAGCTCCGAAGACAAATCTTCCATGGATTTGGTCCAACCTTCTGACCATCTCTGCTATGTCAAATGCAACTTTTGCAACACTGTTCTTGCGGTTGGAATTCCATGCAGACGTTTGTTGGATACAGTGACAGTGAAATGTGGTCATTGTAGTAATCTCTCCTTTTTGAGCACAAGACCTCCTTTACAAGGCCAATGTATTGATCATCCTCTCAGTTTTCAGTCTCAGGTTGGCTTCTCCACTGATATCCGAAAGGGGGCATCGACATCGTCATCGTCATCGTCGTCTTCAATGGCTAATGAAGAGGAGATTCAACGAATCAAAGCTGCCAACCCAGAAATCCCACATCGAGAAGCATTCAGTGCAGCAGCCAAGAACTGGGCTCGATACATTCCAAATTCAGCTGATGGGTCGGCTTCTGGGACTCACGACAATGAATGA 498 46.18 GLSGGGDGSAKVQCRQQHLMSSEDKSSMDLVQPSDHLCYVKCNFCNTVLAVGIPCRRLLDTVTVKCGHCSNLSFLSTRPPLQGQCIDHPLSFQSQVGFSTDIRKGASTSSSSSSSSMANEEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSADGSASGTHDNE 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1313947 1316378 + Cp4.1LG09g02290.1 Cpe09g00228 474594

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00228 165 Pfam YABBY protein 33 110 IPR006780 GO:0007275
Cpe09g00228 165 Pfam YABBY protein 121 149 IPR006780 GO:0007275
Cpe09g00228 165 MobiDBLite consensus disorder prediction 103 121 - -
Cpe09g00228 165 PANTHER PROTEIN CRABS CLAW 26 117 - -
Cpe09g00228 165 PANTHER PROTEIN YABBY 6-RELATED 120 163 IPR006780 GO:0007275
Cpe09g00228 165 PANTHER PROTEIN CRABS CLAW 120 163 - -
Cpe09g00228 165 PANTHER PROTEIN YABBY 6-RELATED 26 117 IPR006780 GO:0007275
Cpe09g00228 165 MobiDBLite consensus disorder prediction 103 135 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00228 K25796 YAB; plant-specific transcription factor YABBY family protein - csv:101219863 237.654
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01514 Cpe09g00228 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00228 Cpe-Chr9:1313947 Cpe04g01191 Cpe-Chr4:10087072 1.39E-28 dispersed
Cpe01g01514 Cpe-Chr1:9051093 Cpe09g00228 Cpe-Chr9:1313947 3.56E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g12 . Blo16g01078 . . . . . . Cmo04g01795 Cmo18g01120 . Cma18g01098 . Car18g01013 Sed07g2037 Cpe09g00228 Cpe01g01514 Bhi07g01472 Tan04g0975 Cmetu10g1095 . . . . . . . . . . . Cone13ag0895 Cone19ag0892 . . Lsi04g00355 Csa05g02521 . Cme10g00349 . . . . . . . . . . . Cma04g01709 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004928 1 2 1 1 1 2 1 2 2 0 1 2 2 1 1 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49972 PF04690 YABBY 2.60E-21 CL0114 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00228 Cpe_Chr09 FPKM 2.238506 3.171621 9.518007 9.707327 8.258565 8.892845 9.704909 33.829308 34.722206 34.46846