Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00242 ATGTGGAGAAACATTGTCAAAAGAGCTGCTTCAAGGAGGGATACGTTCTTCTCCAGAAAAGTTATTGAAGACTCTATCTCTGTTGAGGAAATTAGATCCTCCAGGACACTTGGAAGCTTGAAATCATGTTGCCTGTTAGAGGGCTCTCGTGGAATCAGCTTTTTCCATTCCCGTGAAGTTGGGTTTGCGAAATCCAATTTCGCACATTCAAGCGAGCCCGTAGCTTTTTATGGGGTTCTAAACCATGCCAAAGGCTACGCAACTGCTGCGGAGGCTGCGATTTCCGAGGAGGACTTATCAGGGTCGGAAGAAATTCAGGAATTGATGGAGGAACTAAGCAAACAAGATAAGGTGGAGTCTCACTTTAAGCAGCCTAAGAAAATGGTGGATGGAATGAGGGTAGGTAAGTACAATATTCTACGGAAGAGACAGATAAAGATGGAGACGGAGGCTTGGGAAGAGGCTGCCAGAGAGTATCAAGAGCTATTAACGGATATGTGTGAGCAGAAGTTGGCGCCCAATTTACCTTACATAAAGTCTTTATTCCTTGGTTGGTTTGAACCCTTGCGTGATGCAATTGCTGCAGACCAGGAGTTTTGCAAGAAGAAGAGTAGAGTGTCTCATGCTCCTTATTTTGATCTTCTGCCGGCGGATATGATGGCTGTGATTACAATGCATAAGTTAATGGGGTTGTTGATGACTAACAGTGGAGGAAACAGTAGTGTCAGGGTAGTCCAAGCTGCTTGTCAGATAGGAGAAGCCATTGAACACGAGGTTAGAATACACAAGTTCTTTGAGAATATGAAGAAGAAGAAGAGGAACAGTAATGAAAAAACTACTGAAGGAGACACTGAACCTGTGGTCGAAGACCAGGAGAAAGTGGCCAAAGAACAAGACAAATTGAGGAAAAAAGTCACCAACCTGATGAAAAAACAGAAGTTGCGGCAAGTTAGGATGATAGTCAAGGAACACGACCATTTAAAGCCTTGGGGCCAGGATGCGCATGTGAAGGTTGGTTGTCGTTTGATTCAGCTATTGATTGAAACAGCGTATATTCAACCTCCAATGGATCAGTTAGGAGGGGGTCCTCCTGATATTCGTCCCGCATTTGTCCATACTCTTAAAACCATCACAAAAGAAGCACAAAAGACTAGCAGAAGATATGGTGTTATTGAATGCGATCCACTTGTTCGCAGAGGCCTGGAGAAAACTGCAAGACACATGGTCATACCATATATGCCTATGCTGGTGCCTCCCCTTAATTGGACAGGGTATGATAAAGGAGCACACTTATTCCTACCATCATATGTTATGCGAATACATGGGGCAAAGCAGCAACGTGAAGCAGTTAAAAGGGTTCCAAAGAAACAACTAGAGCCTGTTTTTGAGGCACTTGATACTCTTGGAAGAACCAAGTGGAGGGTGAACAAAAGAGTCCTTAGCATTATTGACAGGATATGGACCAGTGGTGGTCGTCTTGCTGATTTGGTTGACCGTGAAGATGTTCCTCTACCAGAGGAGCCAACTGTGGAAGATGAAGCAGAAATTCGAAAATGGAAGTGGAAACTCAAGGCTGCAAAAAAAGAGAATAGTGAGAGGCATTCACAGCGGTGTGACATTGAGCTTAAGCTTGCAGTGGCCAGGAAAATGAAAGAAGAGGAGGGCTTTTACTATCCTCACAACTTAGATTTTCGAGGTCGTGCATACCCAATGCATCCACATTTGAATCATCTTGGTTCTGATATGTGTCGAGGAATTCTAGAATTTGCGGAGGGACGGCCACTTGGCGAGTCAGGGTTACGCTGGTTGAAGATACATTTGGCAAATCTATACGCTGGTGGTGTGGACAAGTTATCTTACAAGGATCGAATATCATTTACTGAGAATCATTTGGATGAGATTTTTGATTCGGCAGACAGGCCTCTAGAAGGAAATCGTTGGTGGTTGGGCGCAGAGGATCCTTTTCAGTGCTTGGCAGTGTGTATTAATCTCTCAGAGGCTTTAAGAAGTCCATCGCCGGAAACAACTCTTTCCCATATGCCTGTACACCAGGATGGTTCCTGCAATGGCTTGCAACACTATGCAGCTCTCGGGAGGGACAAGTTGGGAGCAGCGGCAGTCAACCTTGTAGCAGGAGATAAGCCCGCAGATGTGTACTCAGGAATTGCTGCCAGAGTTCTTGACATAATACGAAGTGATGCAGAGAAAGATCCTGCAACTAATCCAAATGCGTTGCATGCTAGACTTTTAATCAATCAGGTGGATCGTAAACTGGTGAAACAAACAGTCATGACATCCGTGTATGGTGTCACGTATATGGGTGCACGGGATCAGATTAAGAAAAGGTTGAAAGAACGAGCATCCATTGCTGATGATTCACAATTATTTGCAGCTTCTTGCTATGCAGCTAGAACTACCTTGACTGCCTTGGGGGAAATGTTTGAAGCAGCAAGAAGTATCATGAGCTGGCTTGGTGAATGTGCAAAGGTAATAGCTTCAGAAAATCAGCCAGTTCGATGGACAACTCCTCTTGGTCTGCCAGTGGTACAACCTTACCGGCAACTAGGAAGACATTTTATCAAGACTTCCTTGCAAATGTTGACTCTACAACGAGAAACTGACAAGGTCATGGCTAAGCGTCAGAAAACAGCTTTTCCTCCAAATTTTGTACACTCCCTTGATGGTTCTCATATGATGATGACTGCTGTCGCCTGCAGAAGGGCAGGCCTTAACTTTGCAGGTGTCCATGATTCATATTGGACCCATGCATGCGATGTTGACGTAATGAACAGGCTACTAAGGGAGAAATTTGTTGAGCTATACGAGGCTCCTATTCTGGAGAATTTACTGGAAAATTTCCAAAAGTCCTTCCCCACTTTAAAGTTTCCGCCCTTACCCGATCGGGGAGACTTTGATCTCAAGGATGTCCTGCAATCTTCCTATTTCTTCAATTAG 2955 44.47 MWRNIVKRAASRRDTFFSRKVIEDSISVEEIRSSRTLGSLKSCCLLEGSRGISFFHSREVGFAKSNFAHSSEPVAFYGVLNHAKGYATAAEAAISEEDLSGSEEIQELMEELSKQDKVESHFKQPKKMVDGMRVGKYNILRKRQIKMETEAWEEAAREYQELLTDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAADQEFCKKKSRVSHAPYFDLLPADMMAVITMHKLMGLLMTNSGGNSSVRVVQAACQIGEAIEHEVRIHKFFENMKKKKRNSNEKTTEGDTEPVVEDQEKVAKEQDKLRKKVTNLMKKQKLRQVRMIVKEHDHLKPWGQDAHVKVGCRLIQLLIETAYIQPPMDQLGGGPPDIRPAFVHTLKTITKEAQKTSRRYGVIECDPLVRRGLEKTARHMVIPYMPMLVPPLNWTGYDKGAHLFLPSYVMRIHGAKQQREAVKRVPKKQLEPVFEALDTLGRTKWRVNKRVLSIIDRIWTSGGRLADLVDREDVPLPEEPTVEDEAEIRKWKWKLKAAKKENSERHSQRCDIELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPHLNHLGSDMCRGILEFAEGRPLGESGLRWLKIHLANLYAGGVDKLSYKDRISFTENHLDEIFDSADRPLEGNRWWLGAEDPFQCLAVCINLSEALRSPSPETTLSHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLDIIRSDAEKDPATNPNALHARLLINQVDRKLVKQTVMTSVYGVTYMGARDQIKKRLKERASIADDSQLFAASCYAARTTLTALGEMFEAARSIMSWLGECAKVIASENQPVRWTTPLGLPVVQPYRQLGRHFIKTSLQMLTLQRETDKVMAKRQKTAFPPNFVHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACDVDVMNRLLREKFVELYEAPILENLLENFQKSFPTLKFPPLPDRGDFDLKDVLQSSYFFN 984
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1398637 1406687 + Cp4.1LG09g02430.1 Cpe09g00242 474608

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00242 984 SUPERFAMILY DNA/RNA polymerases 130 984 IPR043502 -
Cpe09g00242 984 SMART RPOL_N_2 142 470 IPR029262 -
Cpe09g00242 984 ProSitePatterns Bacteriophage-type RNA polymerase family active site signature 2. 754 768 IPR002092 GO:0003677|GO:0003899|GO:0006351
Cpe09g00242 984 ProSitePatterns Bacteriophage-type RNA polymerase family active site signature 1. 681 692 IPR002092 GO:0003677|GO:0003899|GO:0006351
Cpe09g00242 984 Coils Coil 142 162 - -
Cpe09g00242 984 Gene3D - 593 671 - -
Cpe09g00242 984 MobiDBLite consensus disorder prediction 271 295 - -
Cpe09g00242 984 Gene3D - 119 469 IPR037159 -
Cpe09g00242 984 PANTHER DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL 18 984 IPR002092 GO:0003677|GO:0003899|GO:0006351
Cpe09g00242 984 Gene3D - 702 891 - -
Cpe09g00242 984 Pfam DNA-dependent RNA polymerase 593 984 IPR002092 GO:0003677|GO:0003899|GO:0006351
Cpe09g00242 984 PANTHER DNA-DIRECTED RNA POLYMERASE 18 984 - -
Cpe09g00242 984 Pfam DNA-directed RNA polymerase N-terminal 143 470 IPR029262 -
Cpe09g00242 984 Gene3D - 471 553 IPR024075 GO:0003899
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00242 K10908 POLRMT, RPO41; DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6] - csv:101217958 1570.83
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g00242 Cpe13g00995 CCT
Cpe09g00242 Cpe13g00995 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00242 Cpe-Chr9:1398637 Cpe13g00995 Cpe-Chr13:8217381 0 dispersed
Cpe09g00238 Cpe-Chr9:1371774 Cpe09g00242 Cpe-Chr9:1398637 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1006 . . . . . . . . . Cmo18g01103 . Cma18g01081 . . Sed06g1812 Cpe09g00242 . Bhi07g01439 Tan04g0951 Cmetu04g2545 Lac13g0412 Hepe10g1827 . . Cla05g02372 Cam05g2540 Cec05g2571 Cco05g2609 Clacu05g2538 Cmu05g2397 Cre05g2514 . . . . Lsi04g00334 Csa05g02536 Chy10g01079 Cme10g00332 . . . . . . . . . . . . . . Car15g00220 Cpe13g00995 . . . . . . . . . . . . . . . . . Chy09g00175 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000643 2 4 3 3 2 3 3 3 3 3 3 3 4 3 4 5 3 4 5 3 3 3 3 5 4 3 3 3 4 3 100
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00242 Cpe_Chr09 FPKM 19.481899 19.113071 27.30435 27.090681 29.495472 26.652508 28.134436 47.108929 52.727303 47.122272