Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00244 ATGGCCACCATGAAAACAAACCCAAATATGTCTATGGCTGAACTTATCTTAGCTTCCATCTCAAAAATCATAGATTCCACAACGTGCACTGAAGAACATGGACATTTTATTGAGATTGGAAGCTACTTTTATCGAGCATCTATGGCCATTATAGAGCTACAAGCAATAGACCCAATAAGATTTGATGAAATCCTCCAATCTCTAAACAAAAGCATCAATCTTGCAAAGGATCTTCTGGAGAAGTTCTTGACAGGCATTCAACAAGCCTCAGATTCTGAACCCATTAGCATCATAGATCCACTAAAAGAGCTGATAAAACAAATGGGTGAATGCTTGAACAAGGTAGCAACCTATAGTTTTGAGGATCAGAATTATGTGAAAATGGCTATTCTATCACTTTCAGATGAGATGCAGAATATATCCTCTAAAATTGTCACAGCTCAAGCCGTAATTAACGAGCAAGAGATGCGAGCTTCTTCGTCGGATGAACAACCAGAAGTTATTGAAAATGATCTATACCCCATTGACATGGACTGGGACACAAACAATACACAATCACCAGTTGAGTCAGAGTTGAGTGAAGCTGTTAAGTATAGAAATGTCACAGAAGTTTCGACAAAACGACCCTCGACAGCTAACTACATAGAGCCTCTTTTCGAGACCTTCATCTGTCCGTTGACGAAAGACATCATGGATGATCCGGTTAGCCTTGAAACGGGAGTGACATACGAAAGAAAAGCAATCGTCGAGTGGTTTGAAGAGTTTGAAGAATCTGAGGAAGTTTTCTGCCCAGTCACAGGGCAAAAGCTTGTGTCCAAAGCTGTTAATTCAAACAGAGCTCTGAAGTCTACAATAGACAAATGGAAGGAACGTAATGAGATAGCAACAATCAAAGTCGCACGAGCTGCTCTGTCCCTAGCCAGTTCAGATGAAATGGTGCTCGAGGCAATCAAAGACCTGTCGAGCATCAGCAAAGGAAAGCAGTTCAACATAGAACGGATATTCAATTTTGACATGTTGCCTTTGCTCGTCAAGTGTCTGGAGTACAGAAACAAAGATGTTAGATATGCACTTCTTGAGTTATTGCATCAAATGGCAGAAATCAATGAAGACAACAAGAAGATAATCTGTAACCAATTGGACATGTCAAGAATGGTCAATCTACTATCAAGTGGTCACAGGTCAATCCGGAACACATCTTTGCTTCTGTTGCATGAGCTTTCAAGAACACAGTCATTGACTGATCAAATTGGTTCAGTAACTGGGGGGATTTCGATGCTGATCGTTATGAAGGACGATAGGTCTGATGAATTTGCTTCAGAAAAGGCAGATGAAACCTTGAGAAACTTAGAGACATCTCCAACTAATATCAAGCTCATGGCAGAATATGGACTCATGGAGCCCCTAGTAAGGCATCTTACTGAAGGTAATGAGTGGATGAGAATAGAAATGGCAAGCTATCTTGGGGAGATTGTTATTATACAAGATTGTATGGCATATGTAGCTGAGAAGGCCTCTCCAGCTCTTGTCGATATGGTGCACGAAGGAGATACACTTGTCCGAAATGCGGCATTTAAAGCTTTATTGCAAATTTCATCTCACAGACCTAATGGTGAAATACTTGCAAAAGCTGGAACTGTACAAGTCATGGCTGAAGAGATTTTCACTCGTATCATCTGTGATGAACTTAATGATCCAAAAACAGAAGCAGCTGAAATTCTGGCAAATATATGCGAGTCCAGTCTCGATCTTGAGACACTTCAAGTTAATGCTCATGGCTCCACTATGAGCTCAGATTATATAGTCTACAACATCATCGACTTGCTCGATATCTCGACCCCAGATGAATTTAGCAAGAGCCTCATTAGAATACTATTATGCTTGACAAAATCTCCAAAAGCAATGGACACCATTGTTTCAGGGGTAAAAAGCACTGAAGCTTGTGATACCCTCATAGAGTTCCTCAATAGCCCAGATGAAGAACTTGGAATTGTGGCAATAAAACTGCTTATATCACTGTGCCCTTACATGGGCTTCACAATGGCAGAAAGACTCTGTGAAACCAGTGATCAAGTGGAGAATCTTATCAGTAGCATTACTTGGACAGACCAAGTCACAGAGAGGCAGGCACTTTCAGCAACATTCTTAGCAAAACTACCTCACCAGAGCCTGGCTCTAAACACCGTTCTTGTGAAGAAGAACATTGTGTCCAAGATCATGGAAACAATCGATCAAATACCGAGCGGTGGAATGGGAATGAACAGGTATGCAAGTACTTTGCTAGAGGGTTCGGTGGGGATTCTTGTCAGATTCACATCAACACTTCATGATCCACAAATGTTGTTTATAGCAAAATTTCACAATTTTACATCAGTATTTACTAACCTGCTGGCGCAAACATCAAGTGATGAAGTTCAAAAGCTATCCGCCATTGGGTTGGAGAAACTCTCATCAGCATCCATGAGTCTATCAAAGCCCCTAGACACTAAAAGAAAAAGGGTCATAAAATTTCTCCACATACCCAAGCTTCTATCGCTAGGTTCATCAAAGAAGGGTCAGTTACGAGTATGCCCAGTTCATAAAGGGGCTTGCTCTTCACAAAACACATTCTGTTTAGTAAATGCAAAAGCAATTGAAAGGCTATTGAGGTGTTTAGACAATGAGAAGGAAGAGGTAGCTGAGGCAGCTCTGTCAGCCATTTGTACGCTTGTGGATGACGAAGTGGATGTGGACAGAAGTGTGAGCCTACTAAACGAATTTGACACAATAAAGCATGTCCTGAATGTGGTGAGAATGCACAAGCAAGAATCTCTATGGCATAAATCCTTCTGGTTGATAGAGAAGTTCTTGCTCAAAGGTGGGGAAGTCTCACTTTCCAATATATCACAGGACAGATCATTGCCTGCAATATTGGCGGCTGCTTCACATCAAGGGAGCAGCGAAACAAGGCAGATAGCTGAGAAGATATTGACCCATTTGAATATGGTACCAAATTTCTCTTCTCCTAACTATACTCTATGA 3021 41.15 MATMKTNPNMSMAELILASISKIIDSTTCTEEHGHFIEIGSYFYRASMAIIELQAIDPIRFDEILQSLNKSINLAKDLLEKFLTGIQQASDSEPISIIDPLKELIKQMGECLNKVATYSFEDQNYVKMAILSLSDEMQNISSKIVTAQAVINEQEMRASSSDEQPEVIENDLYPIDMDWDTNNTQSPVESELSEAVKYRNVTEVSTKRPSTANYIEPLFETFICPLTKDIMDDPVSLETGVTYERKAIVEWFEEFEESEEVFCPVTGQKLVSKAVNSNRALKSTIDKWKERNEIATIKVARAALSLASSDEMVLEAIKDLSSISKGKQFNIERIFNFDMLPLLVKCLEYRNKDVRYALLELLHQMAEINEDNKKIICNQLDMSRMVNLLSSGHRSIRNTSLLLLHELSRTQSLTDQIGSVTGGISMLIVMKDDRSDEFASEKADETLRNLETSPTNIKLMAEYGLMEPLVRHLTEGNEWMRIEMASYLGEIVIIQDCMAYVAEKASPALVDMVHEGDTLVRNAAFKALLQISSHRPNGEILAKAGTVQVMAEEIFTRIICDELNDPKTEAAEILANICESSLDLETLQVNAHGSTMSSDYIVYNIIDLLDISTPDEFSKSLIRILLCLTKSPKAMDTIVSGVKSTEACDTLIEFLNSPDEELGIVAIKLLISLCPYMGFTMAERLCETSDQVENLISSITWTDQVTERQALSATFLAKLPHQSLALNTVLVKKNIVSKIMETIDQIPSGGMGMNRYASTLLEGSVGILVRFTSTLHDPQMLFIAKFHNFTSVFTNLLAQTSSDEVQKLSAIGLEKLSSASMSLSKPLDTKRKRVIKFLHIPKLLSLGSSKKGQLRVCPVHKGACSSQNTFCLVNAKAIERLLRCLDNEKEEVAEAALSAICTLVDDEVDVDRSVSLLNEFDTIKHVLNVVRMHKQESLWHKSFWLIEKFLLKGGEVSLSNISQDRSLPAILAAASHQGSSETRQIAEKILTHLNMVPNFSSPNYTL 1006
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1408280 1412181 + Cp4.1LG09g02420.1 Cpe09g00244 474610

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00244 1006 SUPERFAMILY RING/U-box 208 297 - -
Cpe09g00244 1006 Pfam Armadillo/beta-catenin-like repeat 865 903 IPR000225 GO:0005515
Cpe09g00244 1006 SMART arm_5 453 493 IPR000225 GO:0005515
Cpe09g00244 1006 SMART arm_5 369 409 IPR000225 GO:0005515
Cpe09g00244 1006 SMART arm_5 327 367 IPR000225 GO:0005515
Cpe09g00244 1006 SMART arm_5 865 905 IPR000225 GO:0005515
Cpe09g00244 1006 Pfam U-box domain 220 293 IPR003613 GO:0004842|GO:0016567
Cpe09g00244 1006 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 8 1005 - -
Cpe09g00244 1006 Gene3D - 497 674 IPR011989 -
Cpe09g00244 1006 SUPERFAMILY ARM repeat 302 640 IPR016024 -
Cpe09g00244 1006 Coils Coil 875 895 - -
Cpe09g00244 1006 Gene3D - 763 1001 IPR011989 -
Cpe09g00244 1006 ProSiteProfiles U-box domain profile. 217 295 IPR003613 GO:0004842|GO:0016567
Cpe09g00244 1006 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 220 294 IPR013083 -
Cpe09g00244 1006 SUPERFAMILY ARM repeat 556 994 IPR016024 -
Cpe09g00244 1006 SMART Ubox_2 221 288 IPR003613 GO:0004842|GO:0016567
Cpe09g00244 1006 Gene3D - 295 496 IPR011989 -
Cpe09g00244 1006 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 42-RELATED 8 1005 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00244 - - - csv:101217719 1433.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00244 Cpe-Chr9:1408280 Cpe11g00782 Cpe-Chr11:6327751 8.68E-123 dispersed
Cpe09g00244 Cpe-Chr9:1408280 Cpe01g01217 Cpe-Chr1:7263712 1.66E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1007 . Blo16g01073 . Bda11g01163 Bpe13g01362 . . . . Cmo18g01102 . Cma18g01080 . Car18g01002 Sed08g1853 Cpe09g00244 . Bhi07g01438 Tan04g0950 Cmetu03g1218 Lac13g0414 Hepe10g1828 . . Cla05g02371 Cam05g2539 Cec05g2569 Cco05g2608 Clacu05g2536 Cmu05g2395 Cre05g2512 . . . . Lsi04g00332 Csa05g02538 Chy10g01080 . . . . Bda11g01163 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012245 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00244 Cpe_Chr09 FPKM 0.693548 0.0 0.0 0.0 0.0 0.0 0.823702 0.0 0.0 0.0