Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00245 ATGGCTTCTTTCTCTGTGGAGGATTTTGTGGGGAATGGGGTTCTCAAGGATCTGCTTCCAACTTTGCTGGAAGAAGGCTGGGATGATGTACCAACCTTGAAGGTTATGAATTCTGAGGATATGGATGCCATAAAGATGACACAACAACAAAAGGAAGCAGTGGAGATCAGAACTTACCTGCATGACAGATCTCTGATGCAGTATGGGGACAGGCTAGAGTCCTCAGGGAAGTGTTTGCCCGAACTTCTAAGCTTGAGCGTTGAAGATTTAACAGCTCAATTCCATATGAAGAGAGGCCACATAGCACGTTTCAAGGACAGAAACAGTTCATGTGCGGATCCCTTGACCAAAAAGTCTGATGCACCTTCTCCATCTACCAGCATCAAAAGGACTTATCAGTCTAACAGCTCAAAGCGGATGCAGAGTATGAGAAGCCGAACATTTCAGGACAGAAAAGTTGAGGAAGCTCTGAGCGATTTCAAGATTGAAGAAGGATATGTATTCAAGGGGATTGTTGCAGCAGAACCAGCCGGCCATAGGGCCTGCGCTTGTGTGCAACCTCCTCCTATTGTTGACAAAGTTGCTCCTTATTCTGCCATTGAAAACATCTCCATTCAGAAATTAACTCCCGAGTATAAGATTGGAATGGAGCGTTTGGTGAAAACTAAGACTCCCCCAATGAAAGCTTCAGCACTATGGCAGAATAAGCCTGCCATAATCCTCTGTATTAGACGTCCTGGGTGCATCATGTGCAGAGCAGAAGCTCACCAGCTATATACCAGAAAACCGGTATTTGATGCACTGGGATTTCAACTATTTGCTGTAATTCACGAACACATAGAATCGGAGGTGAAGGACTTCTGGCCCAGGTACTGGGGAGGCACTGTAATCTTTGACCATGGTAGAGGATTCTTCAAAGCCCTAGGTGGTGGCAAATTAATGAAGGACAAATTCCTATCTGGATTTCTTTTCAACCCTCGAGCCATAGCAAATTATAAGCGTGCAAAAGCTATGGGAGTGAAGCAAAACTTCAACGGAGAAGGAGAAATTAAGGGTGGTCTGTTCATTCTTGGCACAGCGAAGAGTGGTATTGCTTACCAGTTTATTGAGCGGAACTTTGGGGACTGGGCACCTCTTTCTGAAGTAATTAACATCTGTACAAAATTACAGAGCCAATCACAAGTTCCAGGGTCATCCATCGAAACATCCCAATAA 1215 44.69 MASFSVEDFVGNGVLKDLLPTLLEEGWDDVPTLKVMNSEDMDAIKMTQQQKEAVEIRTYLHDRSLMQYGDRLESSGKCLPELLSLSVEDLTAQFHMKRGHIARFKDRNSSCADPLTKKSDAPSPSTSIKRTYQSNSSKRMQSMRSRTFQDRKVEEALSDFKIEEGYVFKGIVAAEPAGHRACACVQPPPIVDKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKASALWQNKPAIILCIRRPGCIMCRAEAHQLYTRKPVFDALGFQLFAVIHEHIESEVKDFWPRYWGGTVIFDHGRGFFKALGGGKLMKDKFLSGFLFNPRAIANYKRAKAMGVKQNFNGEGEIKGGLFILGTAKSGIAYQFIERNFGDWAPLSEVINICTKLQSQSQVPGSSIETSQ 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1413633 1415816 + Cp4.1LG09g02410.1 Cpe09g00245 474611

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00245 404 MobiDBLite consensus disorder prediction 109 147 - -
Cpe09g00245 404 PANTHER - 1 400 IPR032801 -
Cpe09g00245 404 Pfam AhpC/TSA antioxidant enzyme 257 371 IPR032801 -
Cpe09g00245 404 PANTHER - 1 400 - -
Cpe09g00245 404 MobiDBLite consensus disorder prediction 114 143 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00245 - - - csv:101217484 723.391
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1008 . . . . . Bpe10g00916 . Bma15g00107 . Cmo18g01101 . Cma18g01078 . Car18g01001 . Cpe09g00245 . Bhi07g01436 Tan04g0948 . Lac13g0415 Hepe10g1829 . . Cla05g02368 . . . . . . . . . . Lsi04g00330 Csa05g02539 Chy10g01081 Cme10g00329 Blo06g00943 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01208 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011750 1 2 1 1 1 0 1 0 0 1 1 0 1 1 1 1 0 2 1 0 1 1 1 1 2 1 1 2 3 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00245 Cpe_Chr09 FPKM 0.290679 0.0 1.300699 0.689102 1.060108 0.382367 0.60589 0.0 0.0 0.0