Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00246 ATGTCCTGTTCATCAAATCACTACGCTGCTGTGCTTAAGTTTTGCTGCGAAGCTCGGAATCAGGCTCATGTTAAGAAGCTTCACTGCCGCATCATCAGGACTGTACCTAATCCAGAAACCTTTCTGTTTAATAATCTCGTCAATACCTACGGGAAACTTGGCAACTTGAAGAATGCACGGAATGTGTTCGATCAAATTCCTCACCCAAACCTTTTTTCATGGAACACGCTGCTTTCGGCGTACTCAAAATTGGGTCACCTCCACGAGATGCAAGAGGTCTTCAATCGCATGCCGACGCATGATGTGGTCTCTTGGAACTCGCTTCTCTCGGGGTATGCGGGTAGTAATTTTGTTTCCGAATCGGTTAGAGTTTATAACATGATGTTAGAGGAAGGGTCGGTGAACTTGAATAGGATTACATTCTCTACTATGCTAATACTCTCGTCTAATCGAGGATTTGTTGAATTGGGTCGGCAGATTCATGGGCAAATTTTTAAATTTGGTTATCAATCGTATCAGTTTGTTGGCAGTCCTTTGGTAGATATGTACTCGAAAACGGGATGCATCAATGATGCAAAACGGATTTTTGAAGAGATGCCTGAGAAGAATACAGTTGTGTACAATACTATGATCACTGGTCTTTTGCGGTGTGGATTTATCATCGAAGCTGATCAATTGTTTCACAAAATGCCAGAAAAAGATTCTATTTCATGGACAACAATCATAACTGGACTAACCCAAAATGGTTTGTTCAAAGAAGCAATCCACAAGTTTGGAGAAATGAGAACAGAAGGTTTGGGCATGGATCAGTTCACTTTTGGGAGTGTGTTGACTGCTTGTGGCGGTGTTCTGGCACTAGGTGAAGGTAAGCAAATTCACGCCTATATTATTAGGACTGATTATCAAGATAACATCTTCGTAGGAAGTGCTCTAGTTGATATGTATTGCAAGTGTCGGAATGTAAAATATGCGGAAGCAGTGTTTAGAAAAATGAGGCACAAGAATGTAATATCATGGACAGCAATGCTGGTTGGTTATGGCCAGAATGGTTACAGTGAAGAAGCTGTTAGGATTTTTCGTGATATGCAGAGAAATGATATTCATCCTGATGATTTTACACTAGGGAGTTATGTTGCAAAGTATTCCTGGGTTCCCCTGTTAATTATCAGAGCAGAAATTGCTTTCAAACTAAACCCGGTAGGTACACATGAAGTTGTCAAATGA 1224 40.85 MSCSSNHYAAVLKFCCEARNQAHVKKLHCRIIRTVPNPETFLFNNLVNTYGKLGNLKNARNVFDQIPHPNLFSWNTLLSAYSKLGHLHEMQEVFNRMPTHDVVSWNSLLSGYAGSNFVSESVRVYNMMLEEGSVNLNRITFSTMLILSSNRGFVELGRQIHGQIFKFGYQSYQFVGSPLVDMYSKTGCINDAKRIFEEMPEKNTVVYNTMITGLLRCGFIIEADQLFHKMPEKDSISWTTIITGLTQNGLFKEAIHKFGEMRTEGLGMDQFTFGSVLTACGGVLALGEGKQIHAYIIRTDYQDNIFVGSALVDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFRDMQRNDIHPDDFTLGSYVAKYSWVPLLIIRAEIAFKLNPVGTHEVVK 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1415813 1418869 - Cp4.1LG09g02510.1 Cpe09g00246 474612

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00246 407 Pfam PPR repeat family 101 145 IPR002885 -
Cpe09g00246 407 Pfam PPR repeat family 233 280 IPR002885 -
Cpe09g00246 407 Pfam PPR repeat family 334 373 IPR002885 -
Cpe09g00246 407 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Cpe09g00246 407 Pfam PPR repeat 72 100 IPR002885 -
Cpe09g00246 407 Pfam PPR repeat 42 66 IPR002885 -
Cpe09g00246 407 Pfam PPR repeat 179 203 IPR002885 -
Cpe09g00246 407 Gene3D Tetratricopeptide repeat domain 6 151 IPR011990 GO:0005515
Cpe09g00246 407 Gene3D Tetratricopeptide repeat domain 286 383 IPR011990 GO:0005515
Cpe09g00246 407 Gene3D Tetratricopeptide repeat domain 152 283 IPR011990 GO:0005515
Cpe09g00246 407 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 237 IPR002885 -
Cpe09g00246 407 PANTHER - 74 230 - -
Cpe09g00246 407 PANTHER - 5 81 - -
Cpe09g00246 407 PANTHER - 216 374 - -
Cpe09g00246 407 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 70 104 IPR002885 -
Cpe09g00246 407 TIGRFAM PPR: pentatricopeptide repeat domain 236 269 IPR002885 -
Cpe09g00246 407 TIGRFAM PPR: pentatricopeptide repeat domain 72 102 IPR002885 -
Cpe09g00246 407 TIGRFAM PPR: pentatricopeptide repeat domain 337 370 IPR002885 -
Cpe09g00246 407 TIGRFAM PPR: pentatricopeptide repeat domain 205 233 IPR002885 -
Cpe09g00246 407 TIGRFAM PPR: pentatricopeptide repeat domain 179 203 IPR002885 -
Cpe09g00246 407 TIGRFAM PPR: pentatricopeptide repeat domain 310 336 IPR002885 -
Cpe09g00246 407 TIGRFAM PPR: pentatricopeptide repeat domain 103 133 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00246 - - - cpep:111802644 774.622
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00238 Cpe-Chr1:1353506 Cpe09g00246 Cpe-Chr9:1415813 4.38E-06 dispersed
Cpe01g02030 Cpe-Chr1:17279931 Cpe09g00246 Cpe-Chr9:1415813 1.28E-12 dispersed
Cpe03g01185 Cpe-Chr3:9702531 Cpe09g00246 Cpe-Chr9:1415813 1.68E-20 dispersed
Cpe07g00384 Cpe-Chr7:2479147 Cpe09g00246 Cpe-Chr9:1415813 3.35E-19 dispersed
Cpe09g00246 Cpe-Chr9:1415813 Cpe03g00659 Cpe-Chr3:3931034 9.56E-27 dispersed
Cpe15g00525 Cpe-Chr15:6156331 Cpe09g00246 Cpe-Chr9:1415813 1.94E-08 dispersed
Cpe19g01108 Cpe-Chr19:7477602 Cpe09g00246 Cpe-Chr9:1415813 3.49E-14 dispersed
Cpe09g00246 Cpe-Chr9:1415813 Cpe12g00229 Cpe-Chr12:1521226 4.32E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1009 . . . . . . . . Cmo04g01064 . . . Car04g00928 . . Cpe09g00246 . Bhi07g01433 . . . . . . . . . . . . . . . . . . . . . . . Bda07g01508 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011082 1 3 0 0 1 0 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 0 0 0 1 0 0 0 1 19
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00246 Cpe_Chr09 FPKM 15.245833 14.487285 88.378029 81.124123 5.908601 5.157576 5.781253 13.070748 11.481711 9.673507