Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00247 ATGGATATTGGCGGCGGAGATGAATTTAGAGTAGTAAGTAGCCCACAGGATTGTATGTCTTTGGATATGGCTGGTTGTTCTTCTTCCACTGCTCATGTGGTTGAGTCATTTAGCTCTACCATTTGGGAACAAGCAGCTAATTCTCAAAACTTGGGACTCCTCGAAGAACATAACATATGTAGAACTTCAAACGACATAGCAATTAACAAGACCATTGGCTGTCCTGTTCCTTTGAGCAGTGACAATGACAAAACACTTGATATCAGCTGGAGCTTGTCCAATAATATGTTGAAAGGGGGAGGTTACCTTAATGCAATCCCGCCGAGCTTATCTCAACTTCCAGCTGATTCTTCGTTTATTGAGCGTGCAGCCAGGTTCTCCTGGTTTAGTGGTGGAAATTTTGGTGATGTTATTGGCCATTTTGATATTCCTGAGCCTATGGACGTTTTTTCTAGAGGTATGGGAGTAGTAATGCCTGAGAGACAGGAGGATGTTCCTAGACGAAACGGGTTAGGTTCGGTATCTCGAGCTGGAGGACGATTCCAAGGAAATACGGTTAATAGTGAAGCTTCCAAGCCTGTTTCTTTGCATAATGCAGCACATGGAAGCCTTTTGAAATTGGACGATTGTTGTAAACATGCTGTTGATGGTTCTGCTAATGAATCTGATGAAGCTGAGGTTAGCGGTGGCGATGGTTCGGGTGAGCCATGCACGTTAGAGGTTGCAGGTAAGGAAGTTTCTGCTAAGGGCCTCGCTGCAAAGAAAAGGAAAAGGAGTGGACAGAAGGCTGAACTTGATCAAGTCAATGGACCTCTGCAACAAACTAAGGATAATACTGAATCTCAGCTAAAGGGAGATCAAAACCCGAGCTCGACCGCAAACAAGGGTACAGTAAAGCACGGTAAACAGGCGTCTCAACCTTTAGATCCACCAAAGGAAGAGTATATTCATGTTCGAGCTCGAAGAGGCCAGGCGACAAACAGCCATAGTCTTGCAGAAAGGGCAAGGAGGGAGAAAATCAGTGAGAGGATGAAATTTCTTCAAGAACTAGTGCCTGGTTGCAGCAAGGTGACTGGGAAGGCAGTGATGCTCGATGAGATCATTAACTATGTTCAGTCTCTGCAACGACAAGTTGAGATTCTTCAATCTCGAGCTGGTCCCTCGTCGACATTGGGATTTTCTTCACATATGCCCGTTGCTTGTCCCCCGCCTCATGTCTCTCATCGTGGACTTATCCCAGTCAGTTTCCCTGCCATAGCGAGCTCGGAGACGTTAAGAAGAAGCACAATAAGTTCCCAGATGATGCCGAGGTCCGGGGTATTTAAGGAGCCGACTCAGATCAAGAACATGTGGGATGGTGAACTCCATAACATTGTGCAGATGAGCTTTGGGATGTCCACTGCCCCTAATGGTTTAGCAGCTGAAGGTGCATTACTATTAGTACTATACGAGATACTTCGCCACGAACTATTTCTACTTCGTGGTAGTGCGAAACATACCATTACCGTACTTGAAGCTGTGATACTCGAGCTGGTAACCGAGGCAGAACATCAGCTCCCGAGTCCCGACAATCGCCAAGAACTCAATGACCTGATAGAGAAGCAGTTTATGTTCTTGTTGGTTCGGATTCTAGGCGAGTGCTTGCCTTGGTCAATGTATAGAGGCCGATGTCTGGAAACCGAGGAACAGCTGATAAACACAGCTGATAGTGTCTGA 1716 46.04 MDIGGGDEFRVVSSPQDCMSLDMAGCSSSTAHVVESFSSTIWEQAANSQNLGLLEEHNICRTSNDIAINKTIGCPVPLSSDNDKTLDISWSLSNNMLKGGGYLNAIPPSLSQLPADSSFIERAARFSWFSGGNFGDVIGHFDIPEPMDVFSRGMGVVMPERQEDVPRRNGLGSVSRAGGRFQGNTVNSEASKPVSLHNAAHGSLLKLDDCCKHAVDGSANESDEAEVSGGDGSGEPCTLEVAGKEVSAKGLAAKKRKRSGQKAELDQVNGPLQQTKDNTESQLKGDQNPSSTANKGTVKHGKQASQPLDPPKEEYIHVRARRGQATNSHSLAERARREKISERMKFLQELVPGCSKVTGKAVMLDEIINYVQSLQRQVEILQSRAGPSSTLGFSSHMPVACPPPHVSHRGLIPVSFPAIASSETLRRSTISSQMMPRSGVFKEPTQIKNMWDGELHNIVQMSFGMSTAPNGLAAEGALLLVLYEILRHELFLLRGSAKHTITVLEAVILELVTEAEHQLPSPDNRQELNDLIEKQFMFLLVRILGECLPWSMYRGRCLETEEQLINTADSV 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1420189 1424545 - Cp4.1LG09g02530.1 Cpe09g00247 474613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00247 571 PANTHER TRANSCRIPTION FACTOR BHLH49 20 381 - -
Cpe09g00247 571 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 324 374 IPR011598 GO:0046983
Cpe09g00247 571 Gene3D - 321 388 IPR036638 GO:0046983
Cpe09g00247 571 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 380 476 IPR024097 GO:0006355
Cpe09g00247 571 MobiDBLite consensus disorder prediction 266 301 - -
Cpe09g00247 571 PANTHER TRANSCRIPTION FACTOR BHLH49 380 476 - -
Cpe09g00247 571 MobiDBLite consensus disorder prediction 248 311 - -
Cpe09g00247 571 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 20 381 IPR024097 GO:0006355
Cpe09g00247 571 MobiDBLite consensus disorder prediction 163 190 - -
Cpe09g00247 571 SMART finulus 330 380 IPR011598 GO:0046983
Cpe09g00247 571 Coils Coil 364 384 - -
Cpe09g00247 571 Pfam Helix-loop-helix DNA-binding domain 327 375 IPR011598 GO:0046983
Cpe09g00247 571 MobiDBLite consensus disorder prediction 249 263 - -
Cpe09g00247 571 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 322 383 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g01393 Cpe09g00247 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01893 Cpe-Chr1:16191739 Cpe09g00247 Cpe-Chr9:1420189 2.55E-93 dispersed
Cpe06g00219 Cpe-Chr6:1165665 Cpe09g00247 Cpe-Chr9:1420189 2.59E-43 dispersed
Cpe09g00247 Cpe-Chr9:1420189 Cpe13g00466 Cpe-Chr13:4893153 7.70E-103 dispersed
Cpe01g01393 Cpe-Chr1:8390205 Cpe09g00247 Cpe-Chr9:1420189 3.19E-166 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49973 PF00010 HLH 3.10E-06 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00247 - - bhj:120081983 650.588