Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00254 ATGGGTTTTGATTTTCAACATCATTTAAGGATGATTCTAATGGGAATTAGAACAGAGCTTCCCCTGTTCTTCTTGTTTTGCTTATGGTGTTCTTCTGTAAATGGATTGCTTACTGCAAAAGGTGTCAACTTTGAAGTGCAAGCCCTGATGGCCATCAAAGCTGCTCTGAAAGACCCACATTCTGTTCTTAATTGGGATGAAAACGCTGTGGATCCATGTAGCTGGAGCATGATTACTTGTTCTTCAGAGAAATTCGTCATTAGCTTAGGAGCTCCTAGTCAGAACTTGTCGGGTAGCCTGTCGCCGAGCATTGGAAACTTGACCAATCTTCAGTCTGTGCTTCTACAGGACAACAATATATCAGGAACAATCCCAATGGAGCTTGGGAACATACCAAGTCTTGACACTCTTGATCTTTCAAGCAATGGCTTCCATGGAGAAATCCCCATTTCTCTTTCAAATCTCAAGAGTTTGCAGTATCTGAGGTTAAACAACAACAGTCTTTCTGGGGCCATTCCTTCATCGTTAGCCAATATGACTCAGCTGGCATTGCTAGACCTTTCTTTTAACAATCTCAGTGGCCCATTGCCCAGATTGCAAGCCAAAACCTACAACCTTGTTGGGAATTCGTTCATTTGCTCATCTGGGTCGGAGCTTAGCTGCAACGGAACAGCTCCACCGCTCTTATTTGCAGTCAATACGCCTCAAAATCCACAGCCTTTAGGGCGATCCAAGGGCCACAAATTAGCCTTAGCTTTTGGCTCAAGCCTTGGATGTGTTGTTCTGCTAACTATTGGGTTTGGCTTCTTCATTTGGTGGAGGCAACGACACAACCAGCAGATATTCTTCGATGTAAATGACCAAAGATTTGAAGAAGTGTGCCTTGGGAACCTAAGGATTTTCCAGTTCAGAGAGCTACAAGCTGCTACAAACAACTTCAGCAGCAAAAACTTGGTGGGAAAAGGTGGGTTTGGGAATGTATACAAAGGGTACCTTCAAGATGGTACAGTTATAGCTGTGAAGAGACTAAAAGATGGAAATGCCATGAGAGGAGACGTACAATTTCATACTGAAGTTGAGATGATCAGCCTAGCTGTGCACCGGAACCTCCTCCGTCTCTACGGGTTCTGCATGACAACCACGGAGCGACTGCTGGTTTACCCCTATATGTCGAACGGCAGTGTAGCATCCCGTCTCAAAGCGAAGCCAGCTCTGGATTGGAGTACAAGGAAAGGAATAGCGTTGGGTGCAGCTAGAGGCTTACTGTATTTGCATGAGCAGTGTGATCCTAAGATCATACACAGAGACGTCAAGGCTGCAAATATATTGCTTGATGATTACTGCGAGGCTGTGGTTGGAGATTTTGGACTGGCAAAGCTGTTGGATCACAGAGATTCACATGTGACAACTGCCGTACGAGGAACGGTTGGTCATATAGCTCCCGAGTATCTCTCGACGGGTCAATCCTCTGAGAAAACTGATGTCTTTGGATTTGGAATCCTTCTTCTTGAGTTGATCACTGGTCAGAGAGCTCTTGAATTTGGAAAAGCTGCAAATCAGAAAGGAGCCATGCTTGATTGGGTAAAGAAAATTCACCAAGAAAAGAAGCTGGAAATACTAGTTGACAAGGATCTAAGGAACAATTATGACCCGATCGAGCTCGAAGAAATGGTTCAAGTAGCTCTCTTATGTACACAGTATCTTCCAACCACCAGACCTAAGATGTCTGAAGTGGTTAGAATGCTTGAAGGGGATGGACTTGCCGAAAAATGGGAAGCTTCTCAGAGAGCAGAAGCAAACAAGATCAGAGTCAACGAGTTCTCCTCTTCCGAGCGATATTCTGATCTTACAGATGACTCTTCCTTGCTTGTACAAGCCATGGAGCTTTCTGGACCAAGATGA 1902 44.64 MGFDFQHHLRMILMGIRTELPLFFLFCLWCSSVNGLLTAKGVNFEVQALMAIKAALKDPHSVLNWDENAVDPCSWSMITCSSEKFVISLGAPSQNLSGSLSPSIGNLTNLQSVLLQDNNISGTIPMELGNIPSLDTLDLSSNGFHGEIPISLSNLKSLQYLRLNNNSLSGAIPSSLANMTQLALLDLSFNNLSGPLPRLQAKTYNLVGNSFICSSGSELSCNGTAPPLLFAVNTPQNPQPLGRSKGHKLALAFGSSLGCVVLLTIGFGFFIWWRQRHNQQIFFDVNDQRFEEVCLGNLRIFQFRELQAATNNFSSKNLVGKGGFGNVYKGYLQDGTVIAVKRLKDGNAMRGDVQFHTEVEMISLAVHRNLLRLYGFCMTTTERLLVYPYMSNGSVASRLKAKPALDWSTRKGIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVKKIHQEKKLEILVDKDLRNNYDPIELEEMVQVALLCTQYLPTTRPKMSEVVRMLEGDGLAEKWEASQRAEANKIRVNEFSSSERYSDLTDDSSLLVQAMELSGPR 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1462093 1466184 - Cp4.1LG09g02490.1 Cpe09g00254 474620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00254 633 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 23 633 - -
Cpe09g00254 633 SMART serkin_6 313 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe09g00254 633 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 23 633 - -
Cpe09g00254 633 ProSitePatterns Protein kinases ATP-binding region signature. 319 341 IPR017441 GO:0005524
Cpe09g00254 633 Gene3D Phosphorylase Kinase; domain 1 282 389 - -
Cpe09g00254 633 Gene3D Ribonuclease Inhibitor 42 223 IPR032675 -
Cpe09g00254 633 Pfam Protein kinase domain 314 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe09g00254 633 Pfam Leucine rich repeat 132 192 IPR001611 GO:0005515
Cpe09g00254 633 SUPERFAMILY L domain-like 45 206 - -
Cpe09g00254 633 Pfam Leucine rich repeat N-terminal domain 45 81 IPR013210 -
Cpe09g00254 633 SUPERFAMILY Protein kinase-like (PK-like) 291 583 IPR011009 -
Cpe09g00254 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 432 444 IPR008271 GO:0004672|GO:0006468
Cpe09g00254 633 Gene3D Transferase(Phosphotransferase) domain 1 390 602 - -
Cpe09g00254 633 ProSiteProfiles Protein kinase domain profile. 313 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe09g00254 Cpe13g01002 CCT
Cpe09g00254 Cpe13g01002 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02453 Cpe-Chr1:20327024 Cpe09g00254 Cpe-Chr9:1462093 0 dispersed
Cpe09g00254 Cpe-Chr9:1462093 Cpe19g01075 Cpe-Chr19:7333938 2.08E-07 dispersed
Cpe01g00719 Cpe-Chr1:4184686 Cpe09g00254 Cpe-Chr9:1462093 0 transposed
Cpe01g01903 Cpe-Chr1:16231976 Cpe09g00254 Cpe-Chr9:1462093 0 transposed
Cpe01g01385 Cpe-Chr1:8342384 Cpe09g00254 Cpe-Chr9:1462093 2.60E-54 wgd
Cpe13g01002 Cpe-Chr13:8267740 Cpe09g00254 Cpe-Chr9:1462093 5.43E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62590 PF00069 Pkinase 2.90E-43 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00254 - - cmos:111449699 1245.72