Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00259 ATGTACAACCCTTATGCTAGCTCAACTTTATATTCCATCCGGAGTAAAGGGTATCTTCCCAATTACTTAAACGAGCGACCCATCTTCTTAAATGAAAGATGTAATGGAAACCCATTGCATCTTTCATCATCATCATCATGTTGTTCTTGTTGTGTTTGCTATGCATTTCCAACACACAGATTGCCTGTAGGCCCTAGCCTTTTATATGGGTCGAGGCAATCCACCCTGCTTAAATGGTCGATTTCTAGGAGGTTGATGTTGTGTGGCCGAAATCGGTTCTGTTATACGCTTCCGCAATATGGGCATGTTCTGGATTGTTGTGAGGTTCCTTTCTCTATTGTTGATGATAAGGCTTGTCATTGTAGTGAGGGAAGGAGATATAGACAATGTTGTTTGAATTCTGAGGGTGATTTTGAATGCGACGAATCGGATGGATTCGATGAAGAGGACATTGCTGAGGCAATGATCAGTTTGATAAGGGAGGGTTTTGGTAGTCAGGGGAAAAGTAGGTTGTCTAAGAGGGTGGAAGTGGGGAACCGAGGAAAGTCCGGAGCTAAGGAGAGTAGTTTAAGTTCGTCGAGAATGGTAGAACTCGAGAAAAGGGCGAGGAGAGGTGTTGAGGATAAAAGGTTAAGTTCATTTGAAAAGATAAGAGTAGATAGAAAAAGAGAGAGTGGAAATCGTCGTGACAAAGAAGAGAGGAACAGTGAACAGAATAATAAAGTCGGATCGATCGTGGTTGAGTTAAGGAAAAATGGATATAAACTGAACGGAGATCGGTTAGTTCATTCAAGAGGGGATGGTCAGAGTTTGAGAAAAGAAGGGTCTACTTGTTCATCTTATTACTCTCTCTCGTCCTCTGGGGATGTTGAGGAGGATGCTGAAGTGGAAGACAAGAACGTGCAATTCGTTGAGGAATTTTCCGGTGGGTACAGGTACGACTCCGTGAGTGATTTAGGAGAGAAATTAGATGGGCGGATCAAGGAAGAATACAAGAGTCAAGGAGATGATGAGAAGGGGCGAGAAGAGGAATCCGTGCGAGGTGATATTACAGAACGGAATCATGCTAATTGGCATTTGAGGAAGAACTCTGAGACGAAACCTAGTCAAGGATCAACACGAGTAACATCCTCTATAAGTGAAACCTCTGAGACGAACTCGAGATTGTCAAGGACTAGGGAAAGTGGTTATGTAGGTACTTCAAGTTCCAAGAAGAAGTTCGTTGACAAGGAAGAGGAGTTGAAAATGATGGCGACTTTGAACGAGCAATCGAAACAAAATGTATCAGGTAATAAAGTGGGTGGTGTTTATATAAATGAAGGGAAAAAACTTGCTGAAGTATCAGAAATACGGCATGGTAAAGCTGAAGAAATTTCTCGTTCTCAGAAACGACTTACTATTAAGAATGAAAAGCTAGAATTAGATGCAAATCTCGTCAAGAAAGCAAGCAACAGTAGTCATGAAACTGTTCGTCCTGTCCTTCAAGAAGAAAGTTCGAGACGAACTTCATCGGAAAATAGGAAAACCGAGAGAGAAAGGACCTCTCATCAGATAAGTCAGTCGAATGCAGTGATTAACGCAAGTGAAAGTACCGACGTCCACGTAACTTCTAATCAAGAGGTTGAAGAAAGACATCATCAAATAGGAAATCATGCCATTGGGGAAATGGGTTCAAGACAAAAATTTCTTCATCTTGGTGTTATATCAGTAGCCAAAGATGGTAGTACCAACACGACCAACACCTCTGTTTCAAGTTCCGAAGTTGGAACACGAAACGAGGAACAAAATGCAGCATCAAACCTCCTGGCTAAAGACAAAAAGTCTTCGATGGTACATAAAGCTTCTCCGAGCGTTATCTCCAGAAAAGGTTCCCAAGATGCCATGAACATTTCACTGCTTCACGGGACTGATAAAATTTCTTCGACATATTCTGAAAAAACATTTGAAAATAGAATCTTCGAGCAAGAAACTAATAAATCATCAGTGGAAAAAACTAAGGAAACCGTAATAAGAACAGGTCGAAATAATCATCGTGTGGTGCAATCTGAATCAGGAAACGAGGTTAGAGATCATGCAACAAAGTTAAAAGTTCATGGATCGTTTAATTTAAGTTCCGAAAGTAGTTACCAACGGATTGACGTGAATGAGCAAGAAAGTAAAGGCTCGCAGGCTATGTTAATGCCTCCGCCATCTCAGCTTGTAGCTAGAAATCCGTCGCGAACAGAGTCTACTAGTGAAATGGCAAGCCAAATAGTTTCGAGAAGAGCATCAGGAAGTTCGGGTGCTTCCTACGTGCAGTCAGGGGGAAGTCCAGTTTTGCACGGCAAGTCCTACAGAGAAAGCGGGGTAGACGAGAGTACTGGGGAGCCAACCTACCTTATCAATCCTGGTGATACTCTAGGCTCAGCTGACCATTTAGAGAGGTCGTCCGCACCGTTCGTTGGGGAGTCCATTGAGAAGTCCAGGAATGAACCGTTGATTTCCGAAATCCAGAAGGAAGACAATGTCTCTGAAGTAGATTTACTGCATGAAGAGAAGCATGGACAAAAGAATTTTGTAGATTATCAAACGAAGGACCATGACTCGAAGCTCTCATCACGGAGTTCGGGAAGCAAGGGTCCTTCTGATGAAATGTGGCATGTAATGGACTCGACTACTGAGCAGCAGCCTCCGAAAACTGAAGATCCTGAGACTAGTGCACATAGTGAGAATGCAATTGTCAAGAGAAGTGGAAGATCGTTGTGGAATGTCATTTCAGATATAGTTCGTCTCCGTTGGGCTTCACGTGCCGAAACCTCTGATTCAGCTGTAAGATCAGGTGGAAGAAATTCACCAAACGAGTCTGTTAGTAACGAGACATGGTTCTCTGGCCGTGAACATGAAGAAACTGATAATACAAGAATCGGAAGAACCGCAGTTTCTCAATTCACTTCGTCGGATCGGTTAGAAGAACCAAAAAATACATACCATGAAGTAGATACCCCACCTTCCCCAAATGTAATGGAGATCAAGCCATCAAGTGAAACTTTGTTAATTTCTGGAGAGGCGATCTTAACAGATGGTAGGAAGGTTGACGTTATTTCTTCTGGTTCGGATATCGAACGGTCATCATTACCACTGTCTCCCCGAGGTTCTCTCGTTATCGACGAAATTTCTCACAGTGGTAAAACAGATGCCTCTGCAAGCAGCTCGGCTGAGCGGTTGGGGCGTTCTTCTGATGCAACATTACTAGAGATATCAACAACTGGAACCAGGGATGGGGAAGTGAAACAAAGGAAGCTTCAAAGAAACAAGCAAGTTCTTAAAGATCAATTCGACGAATGGGAAGAAGCATACATACTCGAGACTGAGCAGCGGAAAATGGACGAAATGTTCATGAGGGAAGCGCTTGCTGAAGCCAGGAAGGCGGCTGATACCTGGGAGGTACCTGTGGGAGCAGTATTGGTGAAACATGGAAAAATTATCGCTCGTGGCTGCAACCTGGTCGAAGAGCTTCGAGATTCCACAGCCCATGCCGAAATGATTTGTATTCGGGAGGCTTCAAAGCAATTAAAGTCATGGAGGCTTGCTGAGACGACGCTGTACGTGACGCTTGAACCGTGCCCTATGTGCGCTGGAGCGATACTACAAGCACGAGTTGAAAACCTTGTATGGGGAGCACCAAATAAGCTTCTTGGAGCTGATGGCAGCTGGATCAGACTTTTTCCTGATGGTGGCGAGGTAAATGCCTCGGAACAGGCTGAGAAACCTGCTGCACCTGTTCATCCGTTCCACCCGAAAATGACGATACGACGAGGTATATTGGCGTCGGAATGTTCTGATGTAATGCAACACTTCTTTCAGCTAAGGAGGAGAAAGAAAAAGAAGGAAAACACTCCACCTCTAACCATTGCTCATCATCATCATCCATCAAAATTTATTTCTAAGATGCATAATATTTTTCACATATTGTTCTGTTTGTAA 3963 43.4 MYNPYASSTLYSIRSKGYLPNYLNERPIFLNERCNGNPLHLSSSSSCCSCCVCYAFPTHRLPVGPSLLYGSRQSTLLKWSISRRLMLCGRNRFCYTLPQYGHVLDCCEVPFSIVDDKACHCSEGRRYRQCCLNSEGDFECDESDGFDEEDIAEAMISLIREGFGSQGKSRLSKRVEVGNRGKSGAKESSLSSSRMVELEKRARRGVEDKRLSSFEKIRVDRKRESGNRRDKEERNSEQNNKVGSIVVELRKNGYKLNGDRLVHSRGDGQSLRKEGSTCSSYYSLSSSGDVEEDAEVEDKNVQFVEEFSGGYRYDSVSDLGEKLDGRIKEEYKSQGDDEKGREEESVRGDITERNHANWHLRKNSETKPSQGSTRVTSSISETSETNSRLSRTRESGYVGTSSSKKKFVDKEEELKMMATLNEQSKQNVSGNKVGGVYINEGKKLAEVSEIRHGKAEEISRSQKRLTIKNEKLELDANLVKKASNSSHETVRPVLQEESSRRTSSENRKTERERTSHQISQSNAVINASESTDVHVTSNQEVEERHHQIGNHAIGEMGSRQKFLHLGVISVAKDGSTNTTNTSVSSSEVGTRNEEQNAASNLLAKDKKSSMVHKASPSVISRKGSQDAMNISLLHGTDKISSTYSEKTFENRIFEQETNKSSVEKTKETVIRTGRNNHRVVQSESGNEVRDHATKLKVHGSFNLSSESSYQRIDVNEQESKGSQAMLMPPPSQLVARNPSRTESTSEMASQIVSRRASGSSGASYVQSGGSPVLHGKSYRESGVDESTGEPTYLINPGDTLGSADHLERSSAPFVGESIEKSRNEPLISEIQKEDNVSEVDLLHEEKHGQKNFVDYQTKDHDSKLSSRSSGSKGPSDEMWHVMDSTTEQQPPKTEDPETSAHSENAIVKRSGRSLWNVISDIVRLRWASRAETSDSAVRSGGRNSPNESVSNETWFSGREHEETDNTRIGRTAVSQFTSSDRLEEPKNTYHEVDTPPSPNVMEIKPSSETLLISGEAILTDGRKVDVISSGSDIERSSLPLSPRGSLVIDEISHSGKTDASASSSAERLGRSSDATLLEISTTGTRDGEVKQRKLQRNKQVLKDQFDEWEEAYILETEQRKMDEMFMREALAEARKAADTWEVPVGAVLVKHGKIIARGCNLVEELRDSTAHAEMICIREASKQLKSWRLAETTLYVTLEPCPMCAGAILQARVENLVWGAPNKLLGADGSWIRLFPDGGEVNASEQAEKPAAPVHPFHPKMTIRRGILASECSDVMQHFFQLRRRKKKKENTPPLTIAHHHHPSKFISKMHNIFHILFCL 1320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1516383 1520907 + Cp4.1LG09g02590.1 Cpe09g00259 474625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00259 1320 MobiDBLite consensus disorder prediction 930 1001 - -
Cpe09g00259 1320 Coils Coil 455 475 - -
Cpe09g00259 1320 Coils Coil 1091 1111 - -
Cpe09g00259 1320 Pfam MafB19-like deaminase 1122 1222 IPR028883 GO:0002100|GO:0008251
Cpe09g00259 1320 MobiDBLite consensus disorder prediction 221 244 - -
Cpe09g00259 1320 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 888 1310 - -
Cpe09g00259 1320 MobiDBLite consensus disorder prediction 478 520 - -
Cpe09g00259 1320 MobiDBLite consensus disorder prediction 734 767 - -
Cpe09g00259 1320 SUPERFAMILY Cytidine deaminase-like 1103 1288 IPR016193 GO:0003824
Cpe09g00259 1320 MobiDBLite consensus disorder prediction 1052 1090 - -
Cpe09g00259 1320 MobiDBLite consensus disorder prediction 601 624 - -
Cpe09g00259 1320 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 1120 1242 IPR002125 -
Cpe09g00259 1320 MobiDBLite consensus disorder prediction 329 362 - -
Cpe09g00259 1320 CDD nucleoside_deaminase 1126 1233 - -
Cpe09g00259 1320 MobiDBLite consensus disorder prediction 170 202 - -
Cpe09g00259 1320 MobiDBLite consensus disorder prediction 576 595 - -
Cpe09g00259 1320 MobiDBLite consensus disorder prediction 258 279 - -
Cpe09g00259 1320 PANTHER TRNA(ADENINE(34)) DEAMINASE, CHLOROPLASTIC 888 1310 - -
Cpe09g00259 1320 Hamap tRNA-specific adenosine deaminase [tadA]. 1126 1284 IPR028883 GO:0002100|GO:0008251
Cpe09g00259 1320 MobiDBLite consensus disorder prediction 1055 1084 - -
Cpe09g00259 1320 MobiDBLite consensus disorder prediction 363 402 - -
Cpe09g00259 1320 MobiDBLite consensus disorder prediction 716 805 - -
Cpe09g00259 1320 MobiDBLite consensus disorder prediction 968 982 - -
Cpe09g00259 1320 MobiDBLite consensus disorder prediction 221 238 - -
Cpe09g00259 1320 MobiDBLite consensus disorder prediction 329 403 - -
Cpe09g00259 1320 MobiDBLite consensus disorder prediction 493 515 - -
Cpe09g00259 1320 MobiDBLite consensus disorder prediction 932 953 - -
Cpe09g00259 1320 MobiDBLite consensus disorder prediction 848 905 - -
Cpe09g00259 1320 MobiDBLite consensus disorder prediction 848 866 - -
Cpe09g00259 1320 Gene3D Cytidine Deaminase, domain 2 1109 1295 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00259 K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] - csv:101215576 1822.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00259 Cpe-Chr9:1516383 Cpe18g00083 Cpe-Chr18:2113820 8.17E-13 dispersed
Cpe09g00259 Cpe-Chr9:1516383 Cpe18g00638 Cpe-Chr18:6574514 5.90E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g220 . . . . . . Bma14g01686 . . Cmo18g01080 . Cma18g01058 . Car18g00983 Sed08g1290 Cpe09g00259 . Bhi07g01388 Tan04g0923 Cmetu02g0302 Lac13g0441 Hepe10g1853 . . Cla05g02348 Cam05g2519 Cec05g2546 Cco05g2588 Clacu05g2514 Cmu05g2376 Cre05g2492 Cone13ag0870 Cone19ag0871 . . Lsi04g00307 Csa05g02561 Chy10g01101 Cme10g00309 . Blo11g00821 Bda07g01517 . Bpe11g01679 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010359 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00259 Cpe_Chr09 FPKM 7.280125 7.400625 9.237508 11.498363 19.701942 24.282934 19.663731 14.93811 16.809029 14.560813