Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe09g00272 | ATGCGTGGGGAGGATCAAGAACAGGATCATCATCATCAACATCAAGGGGAGTGTTCACAAACAATTGAGAATATGTTTCAAGAACAGCTTCTTCTTCACCAACAACTACAAAACAACAACACCGATCATATTATCTATGGAGATCATCACCATCATGGAGCTGGAAGAGGGTTGATTTTCCCGGCCGACGTCGTGTCGCCGGTTCTAAACTCGTGGCCTCCGCTCAACCCATTTCTCATTCCTCCTCCGCCTCCGCCACCGCCACCGACATCGTTATGTTCGTCGTCGTCGTATGGTAATCTTTTCAACCGGAGACCGGCTAATTGTCTTCAATTTGCTTATGATGGAACTTCCTCAGCGGACCACTTGGGTCGAATCATATCAACCACGCTTGGACCAGTGGTTCATCATGGCTCAGCTGCTCCCTTTGGATTACAAGCTGAGCTTGGCAAAATGAGTGCTCAAGAAATAATGGATGCCAAAGCTCTTGCAGCTTCTAAAAGCCATAGTGAAGCGGAGAGAAGAAGAAGAGAAAGAATCAATAATCATCTTGCTAAGCTCCGGAGCTTACTTCCTAGTACCACTAAAACAGACAAAGCTTCACTACTAGCAGAAGTAATACAACACGTGAAAGAGCTAAAACGGCAAACATCATTGATAGCAGAAACAAGTCCAATCCCAACAGACATCGACGAGCTAACAGTGGACGATGCCTCAGACGAGATGATGATCAACGGCGCCAAATTTGTAATAAAAGCTTCTCTTTGCTGTGAGGACCGTTCAGATCTCCTCCCTGACCTCATCAAAACACTGAAATCCTTGCGCTTAAGAACCCTCAAAGCTGAAATCACAACCCTTGGTGGGCGCGTGAGAAATGTGCTGTTTGTCACCGGTGAAGACGACGAGCCATCAACTGACCATAATAACAACAACAACAATAATAATAATAATAATCCCAATTCAGACACCCAACAACAACAACAACATAGTATCAGCTCAATTCAAGAAGCATTGAAGGCTGTGATGGAAAAAACAGGACCGGATGATTCTTCGTCAGGAAACATTAAACGACAAAGAACAAATAACATCAATATCCTTTAA | 1101 | 44.23 | MRGEDQEQDHHHQHQGECSQTIENMFQEQLLLHQQLQNNNTDHIIYGDHHHHGAGRGLIFPADVVSPVLNSWPPLNPFLIPPPPPPPPPTSLCSSSSYGNLFNRRPANCLQFAYDGTSSADHLGRIISTTLGPVVHHGSAAPFGLQAELGKMSAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAETSPIPTDIDELTVDDASDEMMINGAKFVIKASLCCEDRSDLLPDLIKTLKSLRLRTLKAEITTLGGRVRNVLFVTGEDDEPSTDHNNNNNNNNNNNPNSDTQQQQQHSISSIQEALKAVMEKTGPDDSSSGNIKRQRTNNINIL | 366 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 1586058 | 1589014 | + | Cp4.1LG09g02580.1 | Cpe09g00272 | 474638 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe09g00272 | 366 | PANTHER | TRANSCRIPTION FACTOR BHLH30 | 66 | 366 | - | - | |
Cpe09g00272 | 366 | MobiDBLite | consensus disorder prediction | 307 | 335 | - | - | |
Cpe09g00272 | 366 | Pfam | Helix-loop-helix DNA-binding domain | 167 | 213 | IPR011598 | GO:0046983 | |
Cpe09g00272 | 366 | PANTHER | TRANSCRIPTION FACTOR BHLH30 | 66 | 366 | IPR045847 | GO:0003700|GO:0006355 | |
Cpe09g00272 | 366 | Gene3D | - | 159 | 220 | IPR036638 | GO:0046983 | |
Cpe09g00272 | 366 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 164 | 213 | IPR011598 | GO:0046983 | |
Cpe09g00272 | 366 | MobiDBLite | consensus disorder prediction | 299 | 366 | - | - | |
Cpe09g00272 | 366 | SMART | finulus | 170 | 219 | IPR011598 | GO:0046983 | |
Cpe09g00272 | 366 | MobiDBLite | consensus disorder prediction | 347 | 366 | - | - | |
Cpe09g00272 | 366 | CDD | bHLH_AtAIG1_like | 159 | 236 | - | - | |
Cpe09g00272 | 366 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 168 | 219 | IPR036638 | GO:0046983 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe01g01758 | Cpe09g00272 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe05g01517 | Cpe-Chr5:10455507 | Cpe09g00272 | Cpe-Chr9:1586058 | 6.98E-32 | dispersed | |
Cpe09g00272 | Cpe-Chr9:1586058 | Cpe09g00812 | Cpe-Chr9:7533132 | 1.72E-36 | dispersed | |
Cpe19g00741 | Cpe-Chr19:5736788 | Cpe09g00272 | Cpe-Chr9:1586058 | 5.59E-21 | transposed | |
Cpe01g01758 | Cpe-Chr1:13150680 | Cpe09g00272 | Cpe-Chr9:1586058 | 1.57E-100 | wgd | |
Cpe01g01365 | Cpe-Chr1:8212035 | Cpe09g00272 | Cpe-Chr9:1586058 | 6.42E-158 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49976 | PF00010 | HLH | 1.80E-12 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe09g00272 | - | - | cmo:103489248 | 442.58 |