Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00272 ATGCGTGGGGAGGATCAAGAACAGGATCATCATCATCAACATCAAGGGGAGTGTTCACAAACAATTGAGAATATGTTTCAAGAACAGCTTCTTCTTCACCAACAACTACAAAACAACAACACCGATCATATTATCTATGGAGATCATCACCATCATGGAGCTGGAAGAGGGTTGATTTTCCCGGCCGACGTCGTGTCGCCGGTTCTAAACTCGTGGCCTCCGCTCAACCCATTTCTCATTCCTCCTCCGCCTCCGCCACCGCCACCGACATCGTTATGTTCGTCGTCGTCGTATGGTAATCTTTTCAACCGGAGACCGGCTAATTGTCTTCAATTTGCTTATGATGGAACTTCCTCAGCGGACCACTTGGGTCGAATCATATCAACCACGCTTGGACCAGTGGTTCATCATGGCTCAGCTGCTCCCTTTGGATTACAAGCTGAGCTTGGCAAAATGAGTGCTCAAGAAATAATGGATGCCAAAGCTCTTGCAGCTTCTAAAAGCCATAGTGAAGCGGAGAGAAGAAGAAGAGAAAGAATCAATAATCATCTTGCTAAGCTCCGGAGCTTACTTCCTAGTACCACTAAAACAGACAAAGCTTCACTACTAGCAGAAGTAATACAACACGTGAAAGAGCTAAAACGGCAAACATCATTGATAGCAGAAACAAGTCCAATCCCAACAGACATCGACGAGCTAACAGTGGACGATGCCTCAGACGAGATGATGATCAACGGCGCCAAATTTGTAATAAAAGCTTCTCTTTGCTGTGAGGACCGTTCAGATCTCCTCCCTGACCTCATCAAAACACTGAAATCCTTGCGCTTAAGAACCCTCAAAGCTGAAATCACAACCCTTGGTGGGCGCGTGAGAAATGTGCTGTTTGTCACCGGTGAAGACGACGAGCCATCAACTGACCATAATAACAACAACAACAATAATAATAATAATAATCCCAATTCAGACACCCAACAACAACAACAACATAGTATCAGCTCAATTCAAGAAGCATTGAAGGCTGTGATGGAAAAAACAGGACCGGATGATTCTTCGTCAGGAAACATTAAACGACAAAGAACAAATAACATCAATATCCTTTAA 1101 44.23 MRGEDQEQDHHHQHQGECSQTIENMFQEQLLLHQQLQNNNTDHIIYGDHHHHGAGRGLIFPADVVSPVLNSWPPLNPFLIPPPPPPPPPTSLCSSSSYGNLFNRRPANCLQFAYDGTSSADHLGRIISTTLGPVVHHGSAAPFGLQAELGKMSAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAETSPIPTDIDELTVDDASDEMMINGAKFVIKASLCCEDRSDLLPDLIKTLKSLRLRTLKAEITTLGGRVRNVLFVTGEDDEPSTDHNNNNNNNNNNNPNSDTQQQQQHSISSIQEALKAVMEKTGPDDSSSGNIKRQRTNNINIL 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1586058 1589014 + Cp4.1LG09g02580.1 Cpe09g00272 474638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00272 366 PANTHER TRANSCRIPTION FACTOR BHLH30 66 366 - -
Cpe09g00272 366 MobiDBLite consensus disorder prediction 307 335 - -
Cpe09g00272 366 Pfam Helix-loop-helix DNA-binding domain 167 213 IPR011598 GO:0046983
Cpe09g00272 366 PANTHER TRANSCRIPTION FACTOR BHLH30 66 366 IPR045847 GO:0003700|GO:0006355
Cpe09g00272 366 Gene3D - 159 220 IPR036638 GO:0046983
Cpe09g00272 366 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 213 IPR011598 GO:0046983
Cpe09g00272 366 MobiDBLite consensus disorder prediction 299 366 - -
Cpe09g00272 366 SMART finulus 170 219 IPR011598 GO:0046983
Cpe09g00272 366 MobiDBLite consensus disorder prediction 347 366 - -
Cpe09g00272 366 CDD bHLH_AtAIG1_like 159 236 - -
Cpe09g00272 366 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 219 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g01758 Cpe09g00272 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01517 Cpe-Chr5:10455507 Cpe09g00272 Cpe-Chr9:1586058 6.98E-32 dispersed
Cpe09g00272 Cpe-Chr9:1586058 Cpe09g00812 Cpe-Chr9:7533132 1.72E-36 dispersed
Cpe19g00741 Cpe-Chr19:5736788 Cpe09g00272 Cpe-Chr9:1586058 5.59E-21 transposed
Cpe01g01758 Cpe-Chr1:13150680 Cpe09g00272 Cpe-Chr9:1586058 1.57E-100 wgd
Cpe01g01365 Cpe-Chr1:8212035 Cpe09g00272 Cpe-Chr9:1586058 6.42E-158 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49976 PF00010 HLH 1.80E-12 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00272 - - cmo:103489248 442.58