Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00273 ATGTCCGGTAGTAGAGCTAGAAACTTTCGCCGCCGGGCCGACGACAATGACGACGACGACGAACCCAATGGCGCCGCCGCCCCCTCAACCGGTGTTTCAAACGCCTCATCAAAAACCGCTTCCACCTCCTCTACTGTCGCCAATAAACCCAAGAAGGCTAATCCTCAGGTACCCAAGCTTCTCAGCTTCGCCAGTGACGAAGAGAACGATGCCCCACTTCGCACTTCTTCGAAACCAGCCAATTCCAAGAAGCCTTCTTCTGCTCGACTAGCTAAGCCTTCCTCCACCCACAAGATCACTGCCTTGAAGGATCGCATCGCTCACTCTTCTTCAACGTCGGCTTCTGTTCCCTCCAATGTGCAACCTCAAGCTGGAACTTATACCAAGGAGGCCCTCCGCGAGTTGCAGAAGAATACTCGCACGCTTGCGAGCTCGAGATCCTCATCCGAGTCTAAGCCTTCGGCCGAACCTGTTATTGTTCTAAAGGGTCTTCTCAAGCCTGTCGAACAAATTTCGGACAGTGCTAAAGAAGGTAAAGAGTCGAGCTCCGAAGATGAAGAAGGGGGTAGTAATGAAAAGAGCGCTGGTTCGTTTCGGAGGAGTAAAGAAGATGCCTTAGCTCGAATGGCTTCAATGGGGATTGGCAGAGGAAAGGATTCAACTGGGTCAATTCCCGATCAAGCAACCATTAATGCAATTCGCGCGAAAAGGGAACGTATGCGACAGGCTGGGGTTGCAGCTCCGGATTATATATCCTTAGATGCAGGAAGCAACCGCACGGCGCCGGGGGAGTTGAGCGACGAAGAAACAGAGTTTCCAGGGAGAATCGCCATGATTGGAGGGAAGTCAGCAAGTTCGAAGAAGGGCGTGTTTGAGGAATTTGATGAGCAAGCTATTGATGGGGTAAGAACGAATATTATTGAGCACAGCGATGAGGACGAGGAGGAGAAAATATGGGAGGCAGAGCAGTTTAGGAAGGGACTGGGTAAGAGAATGGATGATGGTTCTACTAGGGTGGAGAGCTCAAGTGTCCCTCTCATTCCGAGTGTTCCGCAGCAGAACTTAATTTACCCCACTACAGCTGGGTATAATTCGGTGCCTAGCATATCTACAGCTACAAGCATTGGAGGTTCTGTTGGTGTTTCACAGGGTTTGGATGGGCTATCAATATCTCAGCAAGCTGAGATTGCTAAAAAAGCTATGCGAGATAATATGGGGAGGCTTAAGGAATCTTATCGAAGAACTGCAGCATCTGTGTTGAAGACCGACGAAAACTTGTCTGCATCTCTTTTGAATATCACAGCCCTTGAAAAGTCTCTTTCTGCTGCCGGCGAGAAGTTTATATTTATGCAAAAGCTTCGTGACTTCGTTTCTGTTATCTGTGACTTTTTGCAGCATAAAGCTCCATTCATAGAGGAGCTTGAGGAGCAGATGCAAAAACTTCACGAAGAACGGGCTTCTACAGTCGTGGAAAGAAGAGTAGCTGATAATGATGATGAAATGGTGGAGATAGAAGCAGCTGTAAAAGCAGCAATGTCAATCTTGAATAAGAAAGGGAGCAGCAATGAAATGATTGCTGCAGCCACAAGTGCTGCCCAGGCAGCAATTGCCTCTGCAAAGGAACAGGCAAATCTACCAACAAAGGTAGATGAATTTGGTAGGGATTTAAATTTGCAAAAACGTATGGATATGAAAAGGAGAGCTGAGGCTCGAAAGCGCCGGAGAGCAAAGTATGATTCCAAGAGACTTGCATCCACAGAAGTTGATGGCCATCAAAAAGTAGAAGGAGAGTCTAGCACTGATGAGAGTGATAGTGAGGCTGCAGCTTACCAGTCAAACCATGATTTATTACTTCAGACTGCTGATCAAATTTTTAGTGATGCAGCTGAGGAGTTCTCCCAACTTTCTGTGGTGAAACAGAGGTTTGAACAATGGAAGAGAGATTATTCAGCAACGTACCGTGACGCATATATGTCATTAAGCACTGCTGCTATCTTCTCTCCTTATGTGAGATTGGAACTCTTGAAGTGGGACCCCCTGCATGAAAATGCAGATTTTTTTGACATGAACTGGCACTCTTTGCTGTTCAATTATGGTATGCCGGAAGATGGTAGTGATTTTGCTCCAAATGATGCTGATGCTAACCTTGTCCCAGAACTAGTTGAGAAGGTTGCACTTCCAATATTGCACCATGAAATTGCTCATTGTTGGGACATGCTTAGCACACGTGAAACCCGAAATGCAGCTTTTGCTACTAGCTTGATTACTAACTATGTTCCAACATCAAGTGAAGCTCTTACGGAATTATTGGTTGTTATTCGCACCCGTTTGTCAAGTGCTGTTGAAGATCTTACGGTTCCTACTTGGAGTGCACTGGTGATGAAAGCTGTTCCAAATGCTGCTCGAATTGCAGCTTATCGGTTTGGCATATCCGTTCGTTTGATGAGAAACATATGTTTGTGGAAAGAAATTATTGCATTGCCCATTTTAGAAAAGCTTGCCCTTGAAGAACTCTTATATGGGAAAGTTCTACCTCATGTTAGAAGCATCACAGCGAACATACACGATGCAGTCACAAGAACTGAGCGAATCATTGCTTCTCTTTCAGGAGTGTGGACAGGCCCCGGCGTCACCGGTGATCGCAGTCACAAGTTGCAACCATTGGTAGACTATGTTATGCTACTGGGAAGAACATTGGAGAAAAAACATATTTCAGGCGTAGCTGAGAGCGAGACGAGCGGACTAGCTCGGCGATTAAAGAAGATGCTAGTTGAGCTGAATGAATATGACAATGCAAGAGACATTGCTAAGACCTTCCATCTCAGGGAGGCACTATGA 2838 46.26 MSGSRARNFRRRADDNDDDDEPNGAAAPSTGVSNASSKTASTSSTVANKPKKANPQVPKLLSFASDEENDAPLRTSSKPANSKKPSSARLAKPSSTHKITALKDRIAHSSSTSASVPSNVQPQAGTYTKEALRELQKNTRTLASSRSSSESKPSAEPVIVLKGLLKPVEQISDSAKEGKESSSEDEEGGSNEKSAGSFRRSKEDALARMASMGIGRGKDSTGSIPDQATINAIRAKRERMRQAGVAAPDYISLDAGSNRTAPGELSDEETEFPGRIAMIGGKSASSKKGVFEEFDEQAIDGVRTNIIEHSDEDEEEKIWEAEQFRKGLGKRMDDGSTRVESSSVPLIPSVPQQNLIYPTTAGYNSVPSISTATSIGGSVGVSQGLDGLSISQQAEIAKKAMRDNMGRLKESYRRTAASVLKTDENLSASLLNITALEKSLSAAGEKFIFMQKLRDFVSVICDFLQHKAPFIEELEEQMQKLHEERASTVVERRVADNDDEMVEIEAAVKAAMSILNKKGSSNEMIAAATSAAQAAIASAKEQANLPTKVDEFGRDLNLQKRMDMKRRAEARKRRRAKYDSKRLASTEVDGHQKVEGESSTDESDSEAAAYQSNHDLLLQTADQIFSDAAEEFSQLSVVKQRFEQWKRDYSATYRDAYMSLSTAAIFSPYVRLELLKWDPLHENADFFDMNWHSLLFNYGMPEDGSDFAPNDADANLVPELVEKVALPILHHEIAHCWDMLSTRETRNAAFATSLITNYVPTSSEALTELLVVIRTRLSSAVEDLTVPTWSALVMKAVPNAARIAAYRFGISVRLMRNICLWKEIIALPILEKLALEELLYGKVLPHVRSITANIHDAVTRTERIIASLSGVWTGPGVTGDRSHKLQPLVDYVMLLGRTLEKKHISGVAESETSGLARRLKKMLVELNEYDNARDIAKTFHLREAL 945
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1591606 1597807 - Cp4.1LG09g02820.1 Cpe09g00273 474639

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00273 945 MobiDBLite consensus disorder prediction 27 51 - -
Cpe09g00273 945 Pfam GC-rich sequence DNA-binding factor-like protein 636 839 IPR022783 -
Cpe09g00273 945 MobiDBLite consensus disorder prediction 1 233 - -
Cpe09g00273 945 MobiDBLite consensus disorder prediction 580 600 - -
Cpe09g00273 945 MobiDBLite consensus disorder prediction 137 154 - -
Cpe09g00273 945 PANTHER LD29489P 1 932 - -
Cpe09g00273 945 MobiDBLite consensus disorder prediction 74 94 - -
Cpe09g00273 945 Coils Coil 471 491 - -
Cpe09g00273 945 MobiDBLite consensus disorder prediction 105 126 - -
Cpe09g00273 945 MobiDBLite consensus disorder prediction 172 206 - -
Cpe09g00273 945 MobiDBLite consensus disorder prediction 560 609 - -
Cpe09g00273 945 PANTHER GC-RICH SEQUENCE DNA-BINDING FACTOR 1 932 IPR012890 GO:0000398|GO:0003677|GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00273 K13211 GCFC; GC-rich sequence DNA-binding factor - csv:101204517 1530.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g259 . . . . . . . . . . . . . . . Cpe09g00273 . . . . . . . . . . . . . . . . . . . . Csa05g02578 Chy10g01114 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009042 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 3 1 1 1 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00273 Cpe_Chr09 FPKM 3.61697 4.751737 1.730891 2.510231 18.883863 19.550457 19.239761 1.289776 1.404375 1.005136