Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe09g00275 | ATGGACCAACAACCCACCACTTCCATTAAATCTCCGCCGCCCGACACCAGTCTCGTTTTGGACTCTGCTGACTCCAGCTCCGCCGTAGGTGGCGGCGTCGAGGCTGAATCCCGGAAGCTACCCTCCTCCCGTTTCAAAGGAGTGGTCCCACAGCCCAATGGCCGATGGGGCGCGCAGATTTACGAGAAGCACCAAAGGGTATGGCTCGGAACATTCAATGAAGAAGATGAAGCCGCACGTGCCTATGACGTGGCTGCCCAACGCTTCCGTGGTCGTGACGCCGTTACTAATTTCAAAACGTTATCTCACGGCCAAGTAGACGACGTCGTATCCGCCTTTCTTAATTCCCATTCCAAAGCTGAAATCGTCGACATGCTACGTAAACATACTTACCTTGACGAACTACACCAAAGCAAACGAAACGCCGATTTATTATCTTCGGATCGTAAAAGAAACGGTTCGTTATTATCCGGTTCGGATAATGAACCGGATTCCGCTCGGGAACTTTTATTTGAAAAAGCCGTTACGCCTAGCGATGTTGGGAAATTGAACCGTCTAGTTATCCCTAAACAACACGCCGAGAAAAACTTCCCTCTCCAAACCGGTTCCGCCGGTTCAGCCGGTTCAGCCGCTTCATCCAAAGGACTTCTCTTAAACTTCGAAGACGGCGTCGGGAAAGTGTGGCGGTTCAGGTACTCGTATTGGAATAGTAGTCAAAGCTACGTGTTGACCAAAGGGTGGAGCCGGTTCGTTAAGGAGAAGAACCTAACCGCCGGTGACGTCGTGAGCTTCTTGAAATCGACCGGTGAAGATAAGCAGCTATACATTGAATGGAAGGCGAGCAAGAGTGCAGCCTCGACCGGGTCCAGCACGAACCCGGTTCAGACGGTGAGATTATTTGGAGTGGACATTATGAAAGTAACGCCGAGTAGTGGGTGCAGTGAGAAGAGGAGAAGAGAAATGGAGTTTTTGAGTTCAGAATGTAACAAAAAACAAAGGATCGTCGGAGCATTGTAA | 1017 | 50.15 | MDQQPTTSIKSPPPDTSLVLDSADSSSAVGGGVEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAQRFRGRDAVTNFKTLSHGQVDDVVSAFLNSHSKAEIVDMLRKHTYLDELHQSKRNADLLSSDRKRNGSLLSGSDNEPDSARELLFEKAVTPSDVGKLNRLVIPKQHAEKNFPLQTGSAGSAGSAASSKGLLLNFEDGVGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLTAGDVVSFLKSTGEDKQLYIEWKASKSAASTGSSTNPVQTVRLFGVDIMKVTPSSGCSEKRRREMEFLSSECNKKQRIVGAL | 338 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 1629908 | 1630924 | + | Cp4.1LG09g02730.1 | Cpe09g00275 | 474641 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe09g00275 | 338 | MobiDBLite | consensus disorder prediction | 143 | 163 | - | - | |
Cpe09g00275 | 338 | SMART | rav1_2 | 44 | 105 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe09g00275 | 338 | SMART | B3_2 | 171 | 282 | IPR003340 | GO:0003677 | |
Cpe09g00275 | 338 | Gene3D | AP2/ERF domain | 43 | 100 | IPR036955 | GO:0003700|GO:0006355 | |
Cpe09g00275 | 338 | ProSiteProfiles | B3 DNA-binding domain profile. | 171 | 282 | IPR003340 | GO:0003677 | |
Cpe09g00275 | 338 | CDD | B3_DNA | 170 | 264 | IPR003340 | GO:0003677 | |
Cpe09g00275 | 338 | ProSiteProfiles | AP2/ERF domain profile. | 44 | 99 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe09g00275 | 338 | Pfam | B3 DNA binding domain | 171 | 278 | IPR003340 | GO:0003677 | |
Cpe09g00275 | 338 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 16 | 338 | IPR044800 | GO:0003700 | |
Cpe09g00275 | 338 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Cpe09g00275 | 338 | SUPERFAMILY | DNA-binding pseudobarrel domain | 169 | 268 | IPR015300 | - | |
Cpe09g00275 | 338 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - | |
Cpe09g00275 | 338 | CDD | AP2 | 43 | 98 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe09g00275 | 338 | PANTHER | PROTEIN RAV1, PUTATIVE-RELATED | 16 | 338 | - | - | |
Cpe09g00275 | 338 | Pfam | AP2 domain | 44 | 91 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe09g00275 | 338 | Gene3D | - | 158 | 291 | IPR015300 | - | |
Cpe09g00275 | 338 | SUPERFAMILY | DNA-binding domain | 43 | 99 | IPR016177 | GO:0003677 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe01g01766 | Cpe09g00275 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe09g00275 | Cpe-Chr9:1629908 | Cpe13g00343 | Cpe-Chr13:3208495 | 2.13E-127 | dispersed | |
Cpe18g00558 | Cpe-Chr18:6114418 | Cpe09g00275 | Cpe-Chr9:1629908 | 1.20E-38 | dispersed | |
Cpe01g01350 | Cpe-Chr1:8119732 | Cpe09g00275 | Cpe-Chr9:1629908 | 3.12E-168 | wgd | |
Cpe01g01766 | Cpe-Chr1:13371389 | Cpe09g00275 | Cpe-Chr9:1629908 | 3.76E-127 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49978 | PF02362 | B3 | 2.10E-26 | CL0405 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe09g00275 | K09287 | - | csv:101203784 | 530.406 |