Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00275 ATGGACCAACAACCCACCACTTCCATTAAATCTCCGCCGCCCGACACCAGTCTCGTTTTGGACTCTGCTGACTCCAGCTCCGCCGTAGGTGGCGGCGTCGAGGCTGAATCCCGGAAGCTACCCTCCTCCCGTTTCAAAGGAGTGGTCCCACAGCCCAATGGCCGATGGGGCGCGCAGATTTACGAGAAGCACCAAAGGGTATGGCTCGGAACATTCAATGAAGAAGATGAAGCCGCACGTGCCTATGACGTGGCTGCCCAACGCTTCCGTGGTCGTGACGCCGTTACTAATTTCAAAACGTTATCTCACGGCCAAGTAGACGACGTCGTATCCGCCTTTCTTAATTCCCATTCCAAAGCTGAAATCGTCGACATGCTACGTAAACATACTTACCTTGACGAACTACACCAAAGCAAACGAAACGCCGATTTATTATCTTCGGATCGTAAAAGAAACGGTTCGTTATTATCCGGTTCGGATAATGAACCGGATTCCGCTCGGGAACTTTTATTTGAAAAAGCCGTTACGCCTAGCGATGTTGGGAAATTGAACCGTCTAGTTATCCCTAAACAACACGCCGAGAAAAACTTCCCTCTCCAAACCGGTTCCGCCGGTTCAGCCGGTTCAGCCGCTTCATCCAAAGGACTTCTCTTAAACTTCGAAGACGGCGTCGGGAAAGTGTGGCGGTTCAGGTACTCGTATTGGAATAGTAGTCAAAGCTACGTGTTGACCAAAGGGTGGAGCCGGTTCGTTAAGGAGAAGAACCTAACCGCCGGTGACGTCGTGAGCTTCTTGAAATCGACCGGTGAAGATAAGCAGCTATACATTGAATGGAAGGCGAGCAAGAGTGCAGCCTCGACCGGGTCCAGCACGAACCCGGTTCAGACGGTGAGATTATTTGGAGTGGACATTATGAAAGTAACGCCGAGTAGTGGGTGCAGTGAGAAGAGGAGAAGAGAAATGGAGTTTTTGAGTTCAGAATGTAACAAAAAACAAAGGATCGTCGGAGCATTGTAA 1017 50.15 MDQQPTTSIKSPPPDTSLVLDSADSSSAVGGGVEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAQRFRGRDAVTNFKTLSHGQVDDVVSAFLNSHSKAEIVDMLRKHTYLDELHQSKRNADLLSSDRKRNGSLLSGSDNEPDSARELLFEKAVTPSDVGKLNRLVIPKQHAEKNFPLQTGSAGSAGSAASSKGLLLNFEDGVGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLTAGDVVSFLKSTGEDKQLYIEWKASKSAASTGSSTNPVQTVRLFGVDIMKVTPSSGCSEKRRREMEFLSSECNKKQRIVGAL 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1629908 1630924 + Cp4.1LG09g02730.1 Cpe09g00275 474641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00275 338 MobiDBLite consensus disorder prediction 143 163 - -
Cpe09g00275 338 SMART rav1_2 44 105 IPR001471 GO:0003700|GO:0006355
Cpe09g00275 338 SMART B3_2 171 282 IPR003340 GO:0003677
Cpe09g00275 338 Gene3D AP2/ERF domain 43 100 IPR036955 GO:0003700|GO:0006355
Cpe09g00275 338 ProSiteProfiles B3 DNA-binding domain profile. 171 282 IPR003340 GO:0003677
Cpe09g00275 338 CDD B3_DNA 170 264 IPR003340 GO:0003677
Cpe09g00275 338 ProSiteProfiles AP2/ERF domain profile. 44 99 IPR001471 GO:0003700|GO:0006355
Cpe09g00275 338 Pfam B3 DNA binding domain 171 278 IPR003340 GO:0003677
Cpe09g00275 338 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 16 338 IPR044800 GO:0003700
Cpe09g00275 338 MobiDBLite consensus disorder prediction 1 24 - -
Cpe09g00275 338 SUPERFAMILY DNA-binding pseudobarrel domain 169 268 IPR015300 -
Cpe09g00275 338 MobiDBLite consensus disorder prediction 1 46 - -
Cpe09g00275 338 CDD AP2 43 98 IPR001471 GO:0003700|GO:0006355
Cpe09g00275 338 PANTHER PROTEIN RAV1, PUTATIVE-RELATED 16 338 - -
Cpe09g00275 338 Pfam AP2 domain 44 91 IPR001471 GO:0003700|GO:0006355
Cpe09g00275 338 Gene3D - 158 291 IPR015300 -
Cpe09g00275 338 SUPERFAMILY DNA-binding domain 43 99 IPR016177 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g01766 Cpe09g00275 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00275 Cpe-Chr9:1629908 Cpe13g00343 Cpe-Chr13:3208495 2.13E-127 dispersed
Cpe18g00558 Cpe-Chr18:6114418 Cpe09g00275 Cpe-Chr9:1629908 1.20E-38 dispersed
Cpe01g01350 Cpe-Chr1:8119732 Cpe09g00275 Cpe-Chr9:1629908 3.12E-168 wgd
Cpe01g01766 Cpe-Chr1:13371389 Cpe09g00275 Cpe-Chr9:1629908 3.76E-127 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49978 PF02362 B3 2.10E-26 CL0405 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00275 K09287 - csv:101203784 530.406