Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00276 ATGGATGTCCCCGATAATGTCGTTGATATTCGTGTGGGAATGGATTTGCGTCACTATGCAGATGCTCTGGATCAAGAACGCAGAAAAATTCTGGTTTTTCAGAGAGAACTTCCCCTCTGTGTGGAGCTTGTTACCAGAGCTATTGATTCTTGCCGGCAGAAGTTATCTGGGGTCTCGTCGGAGAGTTCAGAGCATACTTCTTCCGATGGCCCTGTTTTGGAGGAGTTCATTCCGATCAAAAAAGATTCCGGTGATCCCAATTTTGAACAATCAAAACCATATATAAATGAAGTGGGTCCATTGGATTGGCTTAAATCCGCTCAGCTTTGGAATCAAACGTTGGATCCTCCGGTTGTTGAGGATGTTGCTAAGAAACCGCCGTCGGCGGTTGTTGAGGAAGAAAAGAAAGGCGTGGGCGGTGGTTTTCGGCCATTTCAGGAGAAAAATCCATCTGAAACAGAGGCGGCGGCGGTTGTCGGAAAAACGGTCTGTTGTTATCCGGTGATGGAGGCGACAGCGAGTTCGACGGCGGAAACTGTCTCCAAAGGAAGCGGCGGAAACAGTCAACGAGAAGAGAAGGAATCTCAAACTCAAAGAAAACGGCGGCGGCGCTGGTCGTCGGAGTTACACCGGCGATTCGTTCGTGCCCTTCAACGACTGGGCGGCTCTCAAGTTGCTACACCAAAACAAATTCGCGAGTTAATGAAGGTTGACGATTTGACTAACGATGAAGTCAAAAGCCATTTACAGAAATACCGATTACACGCACGACGGCCGACAAATTCCGCCATGCCCGACAGCGCTGTGCAGAAATTCGTGGTGGTCGGAAGCATGTGGGAACCGCCGCCGCCGCCACCACCACCGAAGTACATGGCGATGACGACGGGGCAAGTGACCCCGGTGGCGAGAGTCGTGCAACGGCAGAAGACGGCGGAAGGAGGAATGGGGAGACCCATCGGCGGGATGGTTCAATTGAATTCGCCGCCCGCATCTTACTCGACTCTGACCGCCACAACCTCGCCGGCGAAAGCGTAG 1035 52.08 MDVPDNVVDIRVGMDLRHYADALDQERRKILVFQRELPLCVELVTRAIDSCRQKLSGVSSESSEHTSSDGPVLEEFIPIKKDSGDPNFEQSKPYINEVGPLDWLKSAQLWNQTLDPPVVEDVAKKPPSAVVEEEKKGVGGGFRPFQEKNPSETEAAAVVGKTVCCYPVMEATASSTAETVSKGSGGNSQREEKESQTQRKRRRRWSSELHRRFVRALQRLGGSQVATPKQIRELMKVDDLTNDEVKSHLQKYRLHARRPTNSAMPDSAVQKFVVVGSMWEPPPPPPPPKYMAMTTGQVTPVARVVQRQKTAEGGMGRPIGGMVQLNSPPASYSTLTATTSPAKA 344
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 1632809 1634299 + Cp4.1LG09g02740.1 Cpe09g00276 474642
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00276 344 MobiDBLite consensus disorder prediction 187 202 - -
Cpe09g00276 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 197 257 IPR017930 -
Cpe09g00276 344 PANTHER TRANSCRIPTION FACTOR HHO2 15 302 - -
Cpe09g00276 344 MobiDBLite consensus disorder prediction 174 207 - -
Cpe09g00276 344 Gene3D - 199 256 - -
Cpe09g00276 344 Pfam Myb-like DNA-binding domain 202 253 IPR001005 -
Cpe09g00276 344 SUPERFAMILY Homeodomain-like 197 258 IPR009057 -
Cpe09g00276 344 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 15 302 IPR044787 GO:0003700|GO:0006355
Cpe09g00276 344 MobiDBLite consensus disorder prediction 326 344 - -
Cpe09g00276 344 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 200 255 IPR006447 GO:0003677
Cpe09g00276 344 MobiDBLite consensus disorder prediction 312 344 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cpe09g00276 Cpe13g00409 CCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01799 Cpe-Chr1:14682230 Cpe09g00276 Cpe-Chr9:1632809 3.46E-82 dispersed
Cpe09g00276 Cpe-Chr9:1632809 Cpe13g00409 Cpe-Chr13:4437223 2.84E-77 dispersed
Cpe01g01351 Cpe-Chr1:8123300 Cpe09g00276 Cpe-Chr9:1632809 5.24E-140 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49979 PF00249 Myb_DNA-binding 2.30E-05 CL0123 Cpe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00276 - - cpep:111802196 632.484