Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00276 ATGGATGTCCCCGATAATGTCGTTGATATTCGTGTGGGAATGGATTTGCGTCACTATGCAGATGCTCTGGATCAAGAACGCAGAAAAATTCTGGTTTTTCAGAGAGAACTTCCCCTCTGTGTGGAGCTTGTTACCAGAGCTATTGATTCTTGCCGGCAGAAGTTATCTGGGGTCTCGTCGGAGAGTTCAGAGCATACTTCTTCCGATGGCCCTGTTTTGGAGGAGTTCATTCCGATCAAAAAAGATTCCGGTGATCCCAATTTTGAACAATCAAAACCATATATAAATGAAGTGGGTCCATTGGATTGGCTTAAATCCGCTCAGCTTTGGAATCAAACGTTGGATCCTCCGGTTGTTGAGGATGTTGCTAAGAAACCGCCGTCGGCGGTTGTTGAGGAAGAAAAGAAAGGCGTGGGCGGTGGTTTTCGGCCATTTCAGGAGAAAAATCCATCTGAAACAGAGGCGGCGGCGGTTGTCGGAAAAACGGTCTGTTGTTATCCGGTGATGGAGGCGACAGCGAGTTCGACGGCGGAAACTGTCTCCAAAGGAAGCGGCGGAAACAGTCAACGAGAAGAGAAGGAATCTCAAACTCAAAGAAAACGGCGGCGGCGCTGGTCGTCGGAGTTACACCGGCGATTCGTTCGTGCCCTTCAACGACTGGGCGGCTCTCAAGTTGCTACACCAAAACAAATTCGCGAGTTAATGAAGGTTGACGATTTGACTAACGATGAAGTCAAAAGCCATTTACAGAAATACCGATTACACGCACGACGGCCGACAAATTCCGCCATGCCCGACAGCGCTGTGCAGAAATTCGTGGTGGTCGGAAGCATGTGGGAACCGCCGCCGCCGCCACCACCACCGAAGTACATGGCGATGACGACGGGGCAAGTGACCCCGGTGGCGAGAGTCGTGCAACGGCAGAAGACGGCGGAAGGAGGAATGGGGAGACCCATCGGCGGGATGGTTCAATTGAATTCGCCGCCCGCATCTTACTCGACTCTGACCGCCACAACCTCGCCGGCGAAAGCGTAG 1035 52.08 MDVPDNVVDIRVGMDLRHYADALDQERRKILVFQRELPLCVELVTRAIDSCRQKLSGVSSESSEHTSSDGPVLEEFIPIKKDSGDPNFEQSKPYINEVGPLDWLKSAQLWNQTLDPPVVEDVAKKPPSAVVEEEKKGVGGGFRPFQEKNPSETEAAAVVGKTVCCYPVMEATASSTAETVSKGSGGNSQREEKESQTQRKRRRRWSSELHRRFVRALQRLGGSQVATPKQIRELMKVDDLTNDEVKSHLQKYRLHARRPTNSAMPDSAVQKFVVVGSMWEPPPPPPPPKYMAMTTGQVTPVARVVQRQKTAEGGMGRPIGGMVQLNSPPASYSTLTATTSPAKA 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1632809 1634299 + Cp4.1LG09g02740.1 Cpe09g00276 474642

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00276 344 MobiDBLite consensus disorder prediction 187 202 - -
Cpe09g00276 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 197 257 IPR017930 -
Cpe09g00276 344 PANTHER TRANSCRIPTION FACTOR HHO2 15 302 - -
Cpe09g00276 344 MobiDBLite consensus disorder prediction 174 207 - -
Cpe09g00276 344 Gene3D - 199 256 - -
Cpe09g00276 344 Pfam Myb-like DNA-binding domain 202 253 IPR001005 -
Cpe09g00276 344 SUPERFAMILY Homeodomain-like 197 258 IPR009057 -
Cpe09g00276 344 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 15 302 IPR044787 GO:0003700|GO:0006355
Cpe09g00276 344 MobiDBLite consensus disorder prediction 326 344 - -
Cpe09g00276 344 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 200 255 IPR006447 GO:0003677
Cpe09g00276 344 MobiDBLite consensus disorder prediction 312 344 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00276 - - - cpep:111802196 632.484
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g00276 Cpe13g00409 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01799 Cpe-Chr1:14682230 Cpe09g00276 Cpe-Chr9:1632809 3.46E-82 dispersed
Cpe09g00276 Cpe-Chr9:1632809 Cpe13g00409 Cpe-Chr13:4437223 2.84E-77 dispersed
Cpe01g01351 Cpe-Chr1:8123300 Cpe09g00276 Cpe-Chr9:1632809 5.24E-140 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g270 Blo01g00489 Blo16g01054 Bda01g02090 . Bpe13g01332 . Bma14g01699 . . Cmo18g01059 . Cma18g01041 . Car18g00967 Sed06g1866 Cpe09g00276 . Bhi07g01367 Tan04g0896 Cmetu10g0277 Lac13g0461 Hepe01g1219 . . Cla05g02327 Cam05g2500 Cec05g2524 Cco05g2566 Clacu05g2494 Cmu05g2357 Cre05g2473 Cone13ag0852 Cone19ag0853 Cone6ag0464 Cone9ag0476 Lsi04g00286 Csa05g02583 Chy10g01118 Cme10g00288 . Blo11g00832 Bda07g01528 . . Bpe02g02281 . Bma06g00768 . . . . . . Car15g00854 Cpe13g00409 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0020093 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 4
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49979 PF00249 Myb_DNA-binding 2.30E-05 CL0123 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00276 Cpe_Chr09 FPKM 3.097859 3.828901 1.934299 1.14006 3.294387 2.393517 3.776146 5.493624 4.994621 6.039892