Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe09g00276 | ATGGATGTCCCCGATAATGTCGTTGATATTCGTGTGGGAATGGATTTGCGTCACTATGCAGATGCTCTGGATCAAGAACGCAGAAAAATTCTGGTTTTTCAGAGAGAACTTCCCCTCTGTGTGGAGCTTGTTACCAGAGCTATTGATTCTTGCCGGCAGAAGTTATCTGGGGTCTCGTCGGAGAGTTCAGAGCATACTTCTTCCGATGGCCCTGTTTTGGAGGAGTTCATTCCGATCAAAAAAGATTCCGGTGATCCCAATTTTGAACAATCAAAACCATATATAAATGAAGTGGGTCCATTGGATTGGCTTAAATCCGCTCAGCTTTGGAATCAAACGTTGGATCCTCCGGTTGTTGAGGATGTTGCTAAGAAACCGCCGTCGGCGGTTGTTGAGGAAGAAAAGAAAGGCGTGGGCGGTGGTTTTCGGCCATTTCAGGAGAAAAATCCATCTGAAACAGAGGCGGCGGCGGTTGTCGGAAAAACGGTCTGTTGTTATCCGGTGATGGAGGCGACAGCGAGTTCGACGGCGGAAACTGTCTCCAAAGGAAGCGGCGGAAACAGTCAACGAGAAGAGAAGGAATCTCAAACTCAAAGAAAACGGCGGCGGCGCTGGTCGTCGGAGTTACACCGGCGATTCGTTCGTGCCCTTCAACGACTGGGCGGCTCTCAAGTTGCTACACCAAAACAAATTCGCGAGTTAATGAAGGTTGACGATTTGACTAACGATGAAGTCAAAAGCCATTTACAGAAATACCGATTACACGCACGACGGCCGACAAATTCCGCCATGCCCGACAGCGCTGTGCAGAAATTCGTGGTGGTCGGAAGCATGTGGGAACCGCCGCCGCCGCCACCACCACCGAAGTACATGGCGATGACGACGGGGCAAGTGACCCCGGTGGCGAGAGTCGTGCAACGGCAGAAGACGGCGGAAGGAGGAATGGGGAGACCCATCGGCGGGATGGTTCAATTGAATTCGCCGCCCGCATCTTACTCGACTCTGACCGCCACAACCTCGCCGGCGAAAGCGTAG | 1035 | 52.08 | MDVPDNVVDIRVGMDLRHYADALDQERRKILVFQRELPLCVELVTRAIDSCRQKLSGVSSESSEHTSSDGPVLEEFIPIKKDSGDPNFEQSKPYINEVGPLDWLKSAQLWNQTLDPPVVEDVAKKPPSAVVEEEKKGVGGGFRPFQEKNPSETEAAAVVGKTVCCYPVMEATASSTAETVSKGSGGNSQREEKESQTQRKRRRRWSSELHRRFVRALQRLGGSQVATPKQIRELMKVDDLTNDEVKSHLQKYRLHARRPTNSAMPDSAVQKFVVVGSMWEPPPPPPPPKYMAMTTGQVTPVARVVQRQKTAEGGMGRPIGGMVQLNSPPASYSTLTATTSPAKA | 344 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 1632809 | 1634299 | + | Cp4.1LG09g02740.1 | Cpe09g00276 | 474642 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe09g00276 | 344 | MobiDBLite | consensus disorder prediction | 187 | 202 | - | - | |
Cpe09g00276 | 344 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 197 | 257 | IPR017930 | - | |
Cpe09g00276 | 344 | PANTHER | TRANSCRIPTION FACTOR HHO2 | 15 | 302 | - | - | |
Cpe09g00276 | 344 | MobiDBLite | consensus disorder prediction | 174 | 207 | - | - | |
Cpe09g00276 | 344 | Gene3D | - | 199 | 256 | - | - | |
Cpe09g00276 | 344 | Pfam | Myb-like DNA-binding domain | 202 | 253 | IPR001005 | - | |
Cpe09g00276 | 344 | SUPERFAMILY | Homeodomain-like | 197 | 258 | IPR009057 | - | |
Cpe09g00276 | 344 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR | 15 | 302 | IPR044787 | GO:0003700|GO:0006355 | |
Cpe09g00276 | 344 | MobiDBLite | consensus disorder prediction | 326 | 344 | - | - | |
Cpe09g00276 | 344 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 200 | 255 | IPR006447 | GO:0003677 | |
Cpe09g00276 | 344 | MobiDBLite | consensus disorder prediction | 312 | 344 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe09g00276 | Cpe13g00409 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g01799 | Cpe-Chr1:14682230 | Cpe09g00276 | Cpe-Chr9:1632809 | 3.46E-82 | dispersed | |
Cpe09g00276 | Cpe-Chr9:1632809 | Cpe13g00409 | Cpe-Chr13:4437223 | 2.84E-77 | dispersed | |
Cpe01g01351 | Cpe-Chr1:8123300 | Cpe09g00276 | Cpe-Chr9:1632809 | 5.24E-140 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49979 | PF00249 | Myb_DNA-binding | 2.30E-05 | CL0123 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe09g00276 | - | - | cpep:111802196 | 632.484 |