Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00284 ATGGATTATCAGCAGAAACTTGCCAATTTCTCTTCTTCACCGTCGGCACCACCCCTACCGCCACCACCACCCTCTGTTTCTGCCAATTTCAGCCACCCCCACATGGCGGCGCCAGTCGATTACCCCCGAAATCCCTGCGAACCCCAGCCTCACTCCACAGTTGCTTGGTCCAGCGGTCTCTGCGACTGCTGCAACGACATTAGTATCTGCTGTTTGACTTGCTGGTGTCCCTGCATTACGTTCGGCCACATAGCAGAGATAGTAGACAGAGGATCAATATCGTGTGGCGTTAGCGGCGCAATTTACTTGTCGATACTATGCCTAACGGGGTGCTCGTGCTTGTACTCTTGCCTTTACCGCTCGAAAATGAGGGGACAGTTCTCGTTGGAAGAGAGCCCTTGCTGTGATTGCTGCGTCCATTGCTTGTGTGAGCAATGTGCGCTATGCCAACAGTATAGGGAGCTTCAACACCAAGGCTTCGACATGTCATTTGGTTCTTTCTCTGTCACTTCACTTAAATGGTTAATTTGGTGTGTTGAAATAGTGATGGGTTTTACGTGCATGGGCGTAGGATGGCATGGGAATGTGGAGAGGCAGAGAAGGATTGCTGCTCGTGCTGCTGCGACGCCGCCGCCGCCGCCGCCGCCGCCCAGTGTGCAAGGAATGATTCGTTAA 675 52.89 MDYQQKLANFSSSPSAPPLPPPPPSVSANFSHPHMAAPVDYPRNPCEPQPHSTVAWSSGLCDCCNDISICCLTCWCPCITFGHIAEIVDRGSISCGVSGAIYLSILCLTGCSCLYSCLYRSKMRGQFSLEESPCCDCCVHCLCEQCALCQQYRELQHQGFDMSFGSFSVTSLKWLIWCVEIVMGFTCMGVGWHGNVERQRRIAARAAATPPPPPPPPSVQGMIR 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1681500 1682323 + Cp4.1LG09g02810.1 Cpe09g00284 474650

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00284 224 MobiDBLite consensus disorder prediction 204 224 - -
Cpe09g00284 224 Pfam PLAC8 family 56 154 IPR006461 -
Cpe09g00284 224 MobiDBLite consensus disorder prediction 207 224 - -
Cpe09g00284 224 PANTHER DUF614 FAMILY PROTEIN-RELATED 38 165 IPR006461 -
Cpe09g00284 224 PANTHER PLAC8 MOTIF-CONTAINING PROTEIN-RELATED 38 165 - -
Cpe09g00284 224 TIGRFAM A_thal_Cys_rich: uncharacterized Cys-rich domain 55 157 IPR006461 -
Cpe09g00284 224 MobiDBLite consensus disorder prediction 1 23 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00284 - - - cpep:111802288 443.736
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00050 Cpe-Chr1:321109 Cpe09g00284 Cpe-Chr9:1681500 7.96E-23 dispersed
Cpe01g00051 Cpe-Chr1:326988 Cpe09g00284 Cpe-Chr9:1681500 3.16E-34 dispersed
Cpe09g00284 Cpe-Chr9:1681500 Cpe08g01310 Cpe-Chr8:9416662 1.56E-08 dispersed
Cpe09g00284 Cpe-Chr9:1681500 Cpe08g01368 Cpe-Chr8:9837131 3.64E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g280 . . . . . Bpe10g00942 . . . Cmo18g01050 . Cma18g01035 . Car18g00959 Sed06g1869 Cpe09g00284 . Bhi07g01354 Tan04g0888 Cmetu10g1132 Lac13g0473 . . . Cla05g02318 Cam05g2491 . Cco05g2557 Clacu05g2485 . Cre05g2464 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001588 3 2 1 2 1 1 1 1 0 2 1 1 3 3 3 3 0 6 3 1 2 1 1 2 2 3 2 2 1 13 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00284 Cpe_Chr09 FPKM 3.232961 3.163028 4.322788 6.882868 20.427847 23.220051 18.355518 9.857327 10.671972 15.861312