Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00295 ATGGATTCTACATTCTCCTATATAAAATCGCGGAATTCTGATCCAATCCTTCTTGCTCTCTTTGCTTGCGCTTTCGGTTACCGTCGTTCGGAGGCTTTGCTCGCTCTAGGGTACTACCATAATTCTCTCGAATCCGGCGTACGACGTGCTGCTGTGGTCTTGCATCTCTGCGAAGGCCGCGATCGAGTTCTGAAGATGAAGATTTTCGTCAAGACTCTCAAGGGCTCACACTTCGAAATCGAAGTTCACCCTCAAGATATGGTTGCTGATGTTAAGAAAAACATAGAAACTGTTCAGGGTGCTGATGTTTACCCTGCTGCACAGCAGATGCTTATCCATCAGGGAAAAGTCCTTAAAGACGGCACAACACTGGATGAAAATAAAGTTGCAGAAAATAGTTTTATTGTAATCATGTTAACAAAGAATAAAAGTTCATCGGGTGGGACGTCTTCTACCACACAAGCTGCACCAGTGTCAAAGGCACCACAGAACACTGCCCCTGCACCTGCTGCAACTCCAGTCTCAACATCTGAAGTTCCTCTGCCAACTTCAGCACCTCCGGCTACTATTACCACCTCTTCTCTTCCAGCTCCAGCTCCAGCGCCAGCTCAGGCGCCTGCAACCACTGTCTTGCCAGAATCTGATGTCTACAGCCAAGCAGCTTCTAACCTGGTCGCGGGCAGTAACTTGGAGGAGACTATCCAACAGATTCTTCTCATGGGCGGAGGGATTTGGGATAGGGACACTGTTGTTCAAGCTCTTCGTGCTGCTTACAATAATCCAGAAAGGGCTGTTGATTACCTTTATTCTGGCATACCTGAGCAAGTTGAAGTTCCACCTGCTGCTCATGTTCCGTCTACTGTTCCAGTGACCAACCCTTCCGCTCAACCTGCACAGCCTGCCCAACCTGCCCAAACTGCATCTGCGACAGCCACGGGTCCAAATGCTAATCCATTAGATCTCTTTCCTCAGGGTGTACCTAATTTAGCTTCCGGAGCCGTTAGTTCCGGCAGTCTTGATTTTCTACGAAATAGTCCTCAGTTCCAAGCTTTGCGAGCTATGGTGCGAGCTAACCCTCAGATACTCCAGCCTATGCTTCAAGAGTTGGGTAAACAAAATCCTCAGCTTATTAGACTTATTCAAGATCATCAACCTGACTTCCTCCGCTTGATTAATGAGCCTCTTGAAGGAGAAGGGAATGTACTTGGGCAGCTTGCTGATGCTATGCCGCAGGCTATAACTGTAACCCCCGAGGAACGGGAAGCCATTCAACGGCTTGAGGATTTGGGTTTCGACAGAGCTCTAGTGGTGGAGGTTTTCTTCGCCTGCAACAAGAACGAGGAAATGGCTGCGAACTACCTTTTAGATCATATTCACGAATTTGAGGGTAATCAGAATTAA 1401 47.82 MDSTFSYIKSRNSDPILLALFACAFGYRRSEALLALGYYHNSLESGVRRAAVVLHLCEGRDRVLKMKIFVKTLKGSHFEIEVHPQDMVADVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLDENKVAENSFIVIMLTKNKSSSGGTSSTTQAAPVSKAPQNTAPAPAATPVSTSEVPLPTSAPPATITTSSLPAPAPAPAQAPATTVLPESDVYSQAASNLVAGSNLEETIQQILLMGGGIWDRDTVVQALRAAYNNPERAVDYLYSGIPEQVEVPPAAHVPSTVPVTNPSAQPAQPAQPAQTASATATGPNANPLDLFPQGVPNLASGAVSSGSLDFLRNSPQFQALRAMVRANPQILQPMLQELGKQNPQLIRLIQDHQPDFLRLINEPLEGEGNVLGQLADAMPQAITVTPEEREAIQRLEDLGFDRALVVEVFFACNKNEEMAANYLLDHIHEFEGNQN 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1739143 1745848 - Cp4.1LG09g03000.1 Cpe09g00295 474661

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00295 466 SUPERFAMILY UBA-like 227 278 IPR009060 GO:0005515
Cpe09g00295 466 Pfam Ubiquitin family 68 141 IPR000626 GO:0005515
Cpe09g00295 466 Pfam UBA/TS-N domain 419 454 IPR015940 -
Cpe09g00295 466 Pfam UBA/TS-N domain 230 268 IPR015940 -
Cpe09g00295 466 MobiDBLite consensus disorder prediction 143 198 - -
Cpe09g00295 466 CDD Ubl_Rad23 66 139 - -
Cpe09g00295 466 Pfam XPC-binding domain 339 394 IPR015360 GO:0003684|GO:0006289|GO:0043161
Cpe09g00295 466 MobiDBLite consensus disorder prediction 143 208 - -
Cpe09g00295 466 SUPERFAMILY Ubiquitin-like 66 144 IPR029071 -
Cpe09g00295 466 ProSiteProfiles Ubiquitin domain profile. 66 144 IPR000626 GO:0005515
Cpe09g00295 466 Gene3D - 223 273 - -
Cpe09g00295 466 SMART uba_6 230 270 IPR015940 -
Cpe09g00295 466 SMART uba_6 419 456 IPR015940 -
Cpe09g00295 466 PANTHER EXCISION REPAIR PROTEIN RAD23, PUTATIVE-RELATED 66 462 - -
Cpe09g00295 466 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 416 457 IPR015940 -
Cpe09g00295 466 SMART ubq_7 66 140 IPR000626 GO:0005515
Cpe09g00295 466 PRINTS DNA repair protein Rad23 signature 445 460 IPR004806 GO:0006289
Cpe09g00295 466 PRINTS DNA repair protein Rad23 signature 365 387 IPR004806 GO:0006289
Cpe09g00295 466 PRINTS DNA repair protein Rad23 signature 413 429 IPR004806 GO:0006289
Cpe09g00295 466 PRINTS DNA repair protein Rad23 signature 430 444 IPR004806 GO:0006289
Cpe09g00295 466 TIGRFAM rad23: UV excision repair protein Rad23 66 462 IPR004806 GO:0006289
Cpe09g00295 466 SUPERFAMILY UBA-like 400 461 IPR009060 GO:0005515
Cpe09g00295 466 SUPERFAMILY XPC-binding domain 336 400 IPR036353 GO:0003684|GO:0006289|GO:0043161
Cpe09g00295 466 PANTHER UV EXCISION REPAIR PROTEIN RAD23 66 462 - -
Cpe09g00295 466 MobiDBLite consensus disorder prediction 289 317 - -
Cpe09g00295 466 Gene3D - 63 145 - -
Cpe09g00295 466 Gene3D - 330 394 IPR036353 GO:0003684|GO:0006289|GO:0043161
Cpe09g00295 466 Gene3D - 411 458 - -
Cpe09g00295 466 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 228 271 IPR015940 -
Cpe09g00295 466 SMART CBM 337 380 IPR006636 -
Cpe09g00295 466 MobiDBLite consensus disorder prediction 289 318 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00295 K10839 RAD23, HR23; UV excision repair protein RAD23 - csv:101220491 610.527
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01611 Cpe-Chr2:13490205 Cpe09g00295 Cpe-Chr9:1739143 2.26E-140 transposed
Cpe03g00537 Cpe-Chr3:3139457 Cpe09g00295 Cpe-Chr9:1739143 2.37E-133 transposed
Cpe03g00903 Cpe-Chr3:5757361 Cpe09g00295 Cpe-Chr9:1739143 1.09E-138 transposed
Cpe01g01364 Cpe-Chr1:8202987 Cpe09g00295 Cpe-Chr9:1739143 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g298 . . . . . Bpe10g00939 Bma14g01707 Bma15g00085 . Cmo18g01038 . Cma18g01028 . Car18g00948 Sed06g1882 Cpe09g00295 . Bhi07g01334 Tan04g0868 Cmetu10g1073 Lac13g0486 Hepe01g1200 . . Cla05g02307 . Cec05g2503 Cco05g2545 . . Cre05g2454 Cone13ag0836 Cone19ag0843 . . Lsi04g00262 Csa05g02604 Chy10g01139 Cme10g00268 . Blo11g00839 Bda07g01534 . Bpe11g01698 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004990 1 1 1 2 2 0 2 1 1 1 1 0 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00295 Cpe_Chr09 FPKM 0.447743 0.61081 1.268307 1.317117 0.744513 0.66463 0.578531 0.895286 1.317061 1.248248