Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00299 ATGCCAGAGTACTGTGTGACCGGCGGCACTGGCTTCATAGCCTCCAACTTGGTCAAGGCATTGCTCGAGAACGGTCACCACATAGTCAAAGCTGACTTGCTTGAAGAAGGTAGCTTTGATGAGGCCATTCAAGGAGTTGATGGGGTCTTCCACACTGCTTCACCTGCAACTCTGATTGATCCATGTATAAATGGTACGAAGAACGTACTAAATTCATGTCTAAAAGCGAACAGCGTGAAACGAGTAGTGCTCACCTCGTCCTGCTCTGCAATTAGATATCGTTATGACATCCAGCAACTCTGTCCTCTCAATGAATCGCATTGGTCCGATCCCGAGTATTGCAAGAGCCATAATCTTTGGTATGCATTTGCTAAGACTTTGGCAGAGAAAGAGGCTTGGCGTTTGGCAGAAGAACATGGAATGGATCTAGTTGTGGTGAACCCATCTTTTGTTATTGGTCCTTTGCTTACACCAAAACCAACCAACGACGTGGTAGCAGCGCACATACTAGCAATGGAACATCCAAAAGCATCAGGCAGGATCATATGTTCAAGCACAGTAGCTCACTGGTCAGAGATCATCGCAATGCTCAGAATCAAGTATCCATCCTACCCATTTGAAACCAAATGCAACAACGATCAGAAAGGAGATAGCAACCCTCACAATATGGACACCAGAAAGATATCTAACCTGGGATTCCCCGCTTTCAAGACGCTCGAACAAATGCTTGATGATTCGATCAAGAGTTTCCGAGACAGAGGATTTCTTTGA 771 45.53 MPEYCVTGGTGFIASNLVKALLENGHHIVKADLLEEGSFDEAIQGVDGVFHTASPATLIDPCINGTKNVLNSCLKANSVKRVVLTSSCSAIRYRYDIQQLCPLNESHWSDPEYCKSHNLWYAFAKTLAEKEAWRLAEEHGMDLVVVNPSFVIGPLLTPKPTNDVVAAHILAMEHPKASGRIICSSTVAHWSEIIAMLRIKYPSYPFETKCNNDQKGDSNPHNMDTRKISNLGFPAFKTLEQMLDDSIKSFRDRGFL 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1759595 1763105 - Cp4.1LG09g02980.1 Cpe09g00299 474665

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00299 256 CDD FR_SDR_e 4 233 - -
Cpe09g00299 256 Gene3D - 2 256 - -
Cpe09g00299 256 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 162 255 - -
Cpe09g00299 256 Pfam NAD dependent epimerase/dehydratase family 5 171 IPR001509 -
Cpe09g00299 256 PANTHER TETRAKETIDE ALPHA-PYRONE REDUCTASE 2 162 255 - -
Cpe09g00299 256 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 4 254 IPR036291 -
Cpe09g00299 256 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 27 161 - -
Cpe09g00299 256 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 1 28 - -
Cpe09g00299 256 PANTHER TETRAKETIDE ALPHA-PYRONE REDUCTASE 2 27 161 - -
Cpe09g00299 256 PANTHER TETRAKETIDE ALPHA-PYRONE REDUCTASE 2 1 28 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00299 - - - cmax:111467542 482.641
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00299 Cpe-Chr9:1759595 Cpe16g00372 Cpe-Chr16:5380868 9.65E-64 dispersed
Cpe11g00816 Cpe-Chr11:6624518 Cpe09g00299 Cpe-Chr9:1759595 2.11E-10 dispersed
Cpe09g00299 Cpe-Chr9:1759595 Cpe12g00773 Cpe-Chr12:7020793 5.83E-47 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g304 . . . . . . Bma14g01708 . . Cmo18g01034 . Cma18g01024 . Car18g00943 Sed06g1887 Cpe09g00299 . Bhi07g01326 Tan04g0859 Cmetu10g0120 Lac13g0491 . . . Cla05g02302 Cam05g2475 Cec05g2498 Cco05g2540 Clacu05g2470 Cmu05g2332 Cre05g2449 Cone13ag0832 . . . Lsi04g00257 Csa05g02609 Chy10g01144 Cme10g00263 . Blo11g00754 Bda07g01535 . Bpe11g01623 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007652 1 2 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 3 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00299 Cpe_Chr09 FPKM 11.350657 12.249886 2.791313 2.595711 72.30304 70.833687 74.100487 11.043744 10.990818 10.779434