Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00304 ATGAGAATGAGCTGCAATGGCTGCCGGATCCTTCGCAAAGGCTGCAGCCATGACTGTATTATCAGACCTTGTCTTCAATGGATCCCCTCCCCTGATTCTCAGGCCAACGCCACCATCTTTCTCGCCAAATTCTACGGTCGCGCCGGCCTCTTCAACCTCATCACTGCCGCTGCCGAGCACCTCCGCCCGGCTATTTTCAAGTCGTTGCTGTACGAGGCATGCGGCCGGATGGTGAATCCGGTCTACGGCTCCGTCGGATTGCTCTGCTCCGGCGACTGGGATAAGTGTCAGGCCGCCGTCGACGCCGTGTTGACCGGATCCATGATCGTCGAACCAGACGCGCCGCTGTCAAACACTAACCTTTCCCTTAAATGCTGCGACATTCGTCATGTTTGTAACGACACCAATTTGGCAGTTCCCGGCGAGCTTCACAAGGGCAAGACTCGGAACCGGTTCAAAAAGCCCGACAACCGGACCAAATCCAAACCCGGACCGGGTAATGAATTGGGAAGTGGGTCGAATGTGGAGGTGATAGAGATAGACCGAATGGCGGATGATTTGATGACGAACCGGAGAAAACCGGGTTGGGTTTTGAGAAATGGAATGTGGGTTGAGGAGGAGGATGTTGCGCTGGAGCTGACTCTTAATTCGGCTCAGTAA 660 54.7 MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEHLRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTNLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDNRTKSKPGPGNELGSGSNVEVIEIDRMADDLMTNRRKPGWVLRNGMWVEEEDVALELTLNSAQ 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1789293 1790689 - Cp4.1LG09g03080.1 Cpe09g00304 474670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00304 219 PANTHER LOB DOMAIN-CONTAINING PROTEIN 41-LIKE 1 183 - -
Cpe09g00304 219 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Cpe09g00304 219 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Cpe09g00304 219 MobiDBLite consensus disorder prediction 146 175 - -
Cpe09g00304 219 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 183 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00304 Cpe-Chr9:1789293 Cpe19g00663 Cpe-Chr19:5304244 1.77E-47 dispersed
Cpe18g00757 Cpe-Chr18:7279054 Cpe09g00304 Cpe-Chr9:1789293 1.58E-62 wgd
Cpe04g01407 Cpe-Chr4:11336629 Cpe09g00304 Cpe-Chr9:1789293 1.21E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49981 PF03195 LOB 5.80E-23 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00304 - - cmax:111467594 451.44