Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00316 ATGGCGGCGGCTACATTACTGTCGCATTTCGTTGTTTGTCTCTGTTTGTTACCTTTTACACATCTTTATGCTTCTTCGAACTCGGATTTTGACGCTTTAATGGCGTTCAAAGCGGCGTCTGATGAAGGGAATAAGCTCACCACATGGAACTCTTCTTCGAATCCGTGCGCTTGGAATGGAGTCTCTTGCCTCAGAAACAGAGTCTCGAGGTTAGTTCTTGAGAATCTTGATCTTACAGGCTCTCTTGCACCTCTTACTGGTTTGACTCAGTTACGAGTGTTGAGCCTTAAGCGGAATCGTCTCTCCGGTTCCATTCCCGATTTCTCCAACTTCACCGCTCTTAAACTCGTGTTTCTCTCTTATAATCAATTTTCTGGCGATTTTCCGGCGTCTTTGATGTCTCTTGTCCGTCTCTACCGTCTTGATCTCTCTCACAATAACTTCACCGGAGAGATTCCGGCCTCTGTTAACCGTTTGTCTCATCTTCTTACTCTCCGCCTCGAAGAAAACCGGTTTTCTGGTCCTGTTTTGGAACTGAACCTGCCGAATCTTCAGGATTTCAACGTTTCAGCGAATCGTCTCTCAGGTCAAATCCCTAAATCGCTGTCGACGTTTCCGGCGTCTTGTTTCGGCCAGAACTTGGGTTTGTGTGGATCTCCTCTACAGAGCTGCAATGGCATTGTTACTAACCCGACGGAACCCGGATCCGAAGGAGCCATTGCGTCCCCCATAACACCGCCGCGGAATCTAACAGTTTCATCTTCTCCGACATCGCTTCCCGGAGTTACGCCGGGGAACACCCACCACAAAGGCACCGGGAAGATAGGTTCTCTGGCGCTAATCGCTATAATTCTCGGCGATGTATTGGTGTTGGCAGTAGTCTCGCTTCTTCTCTACTGCTATTTCTGGAGAAACTCCTCCGACAAATCCCGAGATAGTAAGGGGCCGAAGCTTCTTGAGAGCGAGAAGATCGTTTACTCGTCGAGTCCATATCCAGCTCAGGCCGGAACAGAGAGGGGACGGATGGTGTTCTTCGAGGGAGTCAAGAAGTTCGAGCTCGAAGATTTGCTTCGAGCCTCCGCGGAAATGCTCGGAAAAGGTGGGTTCGGAACTTCATACAAAGCGATTCTCGACGACGGCAATGTCGTGGCGGTGAAACGGCTGAAAGACGCGCAGGTCGGAGGTAAACGAGAGTTTGAGCAGCACATGGAGGTGCTCGGAAGGTTGAAACATGAACATATTGTAAGCTTGAGAGCTTACTATTTTGCGAGAGAGGAGAAGCTTTTGGTTTATGATTACATGCCCAATGGCAATCTGTTCTGGCTTCTTCATGGAAACAGAGGCCCTGGACGGACGCCGTTGGACTGGACGACGAGGTTAAAGATCGCCGCCGGAGCAGCCAGAGGTCTGACCTTCATTCACAACTCCAGTAAGTTTCTCAGGCTTGTTCATGGCAATGTGAAATCCACTAACATTCTTCTGGATCAATCGGGAAATGCTCGATCAGTGGTGCGGGAGGAGTGGACGGCGGAGGTTTTTGATTTGGAGCTGATGAGATACAAAGACATCGAAGAGGAAATGGTGGGGCTTCTGCAGATTGCATTGACTTGTACTTCCGCTTCGCCGGATCAACGGCCGAAAATGATCCATGTGGTGAAGATGATCGATGAGCTTCGTGGGGTGGAGGTGTCGCCGTTCCATGACGGCTCCGACTCGGTGACGGAGTCGCCGTCGGTGTCGGAGGGGACTTGCGGCGGCGGCGGCGGCGGAGGAGGAGCCAGTAGTCAG 1788 50.89 MAAATLLSHFVVCLCLLPFTHLYASSNSDFDALMAFKAASDEGNKLTTWNSSSNPCAWNGVSCLRNRVSRLVLENLDLTGSLAPLTGLTQLRVLSLKRNRLSGSIPDFSNFTALKLVFLSYNQFSGDFPASLMSLVRLYRLDLSHNNFTGEIPASVNRLSHLLTLRLEENRFSGPVLELNLPNLQDFNVSANRLSGQIPKSLSTFPASCFGQNLGLCGSPLQSCNGIVTNPTEPGSEGAIASPITPPRNLTVSSSPTSLPGVTPGNTHHKGTGKIGSLALIAIILGDVLVLAVVSLLLYCYFWRNSSDKSRDSKGPKLLESEKIVYSSSPYPAQAGTERGRMVFFEGVKKFELEDLLRASAEMLGKGGFGTSYKAILDDGNVVAVKRLKDAQVGGKREFEQHMEVLGRLKHEHIVSLRAYYFAREEKLLVYDYMPNGNLFWLLHGNRGPGRTPLDWTTRLKIAAGAARGLTFIHNSSKFLRLVHGNVKSTNILLDQSGNARSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIALTCTSASPDQRPKMIHVVKMIDELRGVEVSPFHDGSDSVTESPSVSEGTCGGGGGGGGASSQ 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1877589 1879858 - Cp4.1LG09g03140.1 Cpe09g00316 474682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00316 596 Gene3D Ribonuclease Inhibitor 113 225 IPR032675 -
Cpe09g00316 596 PANTHER - 24 500 - -
Cpe09g00316 596 Gene3D Ribonuclease Inhibitor 20 112 IPR032675 -
Cpe09g00316 596 ProSiteProfiles Protein kinase domain profile. 358 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe09g00316 596 Gene3D Transferase(Phosphotransferase) domain 1 434 525 - -
Cpe09g00316 596 MobiDBLite consensus disorder prediction 565 596 - -
Cpe09g00316 596 SUPERFAMILY L domain-like 44 205 - -
Cpe09g00316 596 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Cpe09g00316 596 SUPERFAMILY Protein kinase-like (PK-like) 362 560 IPR011009 -
Cpe09g00316 596 Pfam Protein kinase domain 361 499 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe09g00316 596 MobiDBLite consensus disorder prediction 237 268 - -
Cpe09g00316 596 MobiDBLite consensus disorder prediction 246 265 - -
Cpe09g00316 596 Gene3D Phosphorylase Kinase; domain 1 333 433 - -
Cpe09g00316 596 PANTHER - 501 573 - -
Cpe09g00316 596 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 501 573 - -
Cpe09g00316 596 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 24 500 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g01333 Cpe09g00316 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00227 Cpe-Chr3:1131574 Cpe09g00316 Cpe-Chr9:1877589 1.30E-144 dispersed
Cpe08g01053 Cpe-Chr8:8040718 Cpe09g00316 Cpe-Chr9:1877589 3.72E-137 dispersed
Cpe09g00316 Cpe-Chr9:1877589 Cpe04g01150 Cpe-Chr4:9863766 2.47E-21 dispersed
Cpe01g01333 Cpe-Chr1:8022491 Cpe09g00316 Cpe-Chr9:1877589 5.06E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62593 PF00069 Pkinase 2.60E-18 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00316 - - cpep:111802740 977.237