Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00318 ATGGAATTTCATATGGGGTTGTTCTGTTCTTTCATTTTGTCCTTTGTTCTTTCTCATCTAGTAGCACATCCTTTGGCTCGGAATGATACTAGTTTCGTTCGTCCAGATTGCCCGCCCTTCGATTGTGGAAATTTTGGCTTCTTAGGATTCCCTTTTAACAACGAAACGCTTACTGATTGCGGATTATACACAGTTAGAAACTGCTCAGGAGAGCCAAAAATCCAGCTGAAACGTGAACGAGATGTATGGTTCGATGTTGTTAGCATATCTCAGGCTAATGTCATCCATATCAATGACACAGAACTTCAAAAGCAAATAAACTCTCGCAATTGTTCAATTCTGGACGATCTGTCTCTTCCGACGTCTCCTTCATTTTCTTTATCCACAAACAATAATATTACCTTATCCAATTGCACAGATAATCCTGGAGGTGATTTTCCTCTTTTCATCAGTAAATTTAGCTGCCCTGGTATTTATTCAATCCTCAACTCTGATACTCCTCCAAACTGTTCCACTTCCAATTCTAGATTTTTAGTTCCAGTTCTCCCGGTTGGTCCCAATAATTCTGTTCTTGAGTTTACTGCTGATTTCCAACTGCGAGTGACCGTATCTAGTATATGTTATGACTGTTTCCGTGAAGGAGGCCAATGCTCGATTACCAATGAAAAATTTGTGTGTAAGGATGGAAAACGAGAAGCAAGCAAAGATAAAAGTAGAATGAGCTTGTGGATAGGACTAGGTGTTGGAGTCCTAGGTGTAAATCTGCTTATGCTATTATTTGCTCTTTGGTACTGCAAAAAAAGGCGTGCTGCTCCAACAATGCTAACAAGGAATATATCTTGTGAACCCTACTCAAAATTCGACCTGGAAGATGGTGGCGTGTGCTTTGAAGTTCCTGTTTTCTCATATGGCGAACTCGAAATGGCCACTAACAAATTTGATCGTGATAAAGAACTTGGAGATGGTGGTTTTGGAACCGTATACCATGGGAAACTCCTTGATGGCCGGGAAGTTGCCGTGAAGCGCTTATATCAACATAACTATAGACGAGTAGAGCAATTCATGAATGAGGTTAAAATTCTCACCCGCCTTCGCCATAAAAATCTGGTCTCCCTTTATGGATGCACTTCAAAACGCAGTCGTGAACTTCTTCTTGTTTATGAATTTGTCGCAAATGGTACTGTTGCTGATCATCTTCATGGCGAACAAGCAAGTTTTAGCTTGCTCACATGGCCTATTCGGATGACCATTGCTATTGAAACAGCAAGTGCTCTAGTTTATCTCCACGCTTCTGATATCATTCATCGTGATGTGAAGACTACTAACATTCTCTTGGACAGTAATTTTTCCGTCAAAGTCGCTGATTTTGGTCTCTCTAGACTATTCCCAAACGACGTTAGTCATGTCTCGACTGCTCCTCAAGGCACCCCTGGTTACGTTGATCCTGAGTATTATCAGTGTTATCAGCTTACAACCAAGAGCGATGTTTATAGTTTTGGTGTCGTCTTAATCGAGCTTATATCGTCAATGCCAGCTGTTGATATAACAAGGCATCGGCACGAGATTAATTTGTCTAACTTAGCCGTGGACAAAATTTTAAGACAGGAAATTGATGAGCTGATTGATCCATGCCTCGGGTATCAATCAGACGAAAAGGTTCGACGCATGATATTGGCAGTGGCTTGGCTAGCTTTTCTATGTCTGCAGCAAGACAAGGAAAGGAGACCAACAATGGAAGAAGCGCTGGAAACTTTAAAGAGGATTGAGAGTGGGGAAGAAAACGAGAATTTGCAGGATAATAGTGCACTGTCGAAGAGCTATGATCCAGCTCCTTCTCCAGAGTATGATGAAGTTGAATTGTTGAAGAATAAGAGGCAGCAGCTGTTGTCCCCTACTTCTGTTGCTGATAAATGGATCAGCTCAACCTCATTTGTTAGTGCTTCTACTTCTCTATCATCTATTTCCTAA 1968 41.26 MEFHMGLFCSFILSFVLSHLVAHPLARNDTSFVRPDCPPFDCGNFGFLGFPFNNETLTDCGLYTVRNCSGEPKIQLKRERDVWFDVVSISQANVIHINDTELQKQINSRNCSILDDLSLPTSPSFSLSTNNNITLSNCTDNPGGDFPLFISKFSCPGIYSILNSDTPPNCSTSNSRFLVPVLPVGPNNSVLEFTADFQLRVTVSSICYDCFREGGQCSITNEKFVCKDGKREASKDKSRMSLWIGLGVGVLGVNLLMLLFALWYCKKRRAAPTMLTRNISCEPYSKFDLEDGGVCFEVPVFSYGELEMATNKFDRDKELGDGGFGTVYHGKLLDGREVAVKRLYQHNYRRVEQFMNEVKILTRLRHKNLVSLYGCTSKRSRELLLVYEFVANGTVADHLHGEQASFSLLTWPIRMTIAIETASALVYLHASDIIHRDVKTTNILLDSNFSVKVADFGLSRLFPNDVSHVSTAPQGTPGYVDPEYYQCYQLTTKSDVYSFGVVLIELISSMPAVDITRHRHEINLSNLAVDKILRQEIDELIDPCLGYQSDEKVRRMILAVAWLAFLCLQQDKERRPTMEEALETLKRIESGEENENLQDNSALSKSYDPAPSPEYDEVELLKNKRQQLLSPTSVADKWISSTSFVSASTSLSSIS 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1891216 1895194 - Cp4.1LG09g03270.1 Cpe09g00318 474684

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00318 655 ProSiteProfiles Protein kinase domain profile. 313 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe09g00318 655 MobiDBLite consensus disorder prediction 588 616 - -
Cpe09g00318 655 CDD STKc_IRAK 319 588 - -
Cpe09g00318 655 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 19 640 - -
Cpe09g00318 655 Gene3D Phosphorylase Kinase; domain 1 290 389 - -
Cpe09g00318 655 ProSitePatterns Protein kinases ATP-binding region signature. 319 341 IPR017441 GO:0005524
Cpe09g00318 655 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 19 640 IPR044652 -
Cpe09g00318 655 SMART serkin_6 313 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe09g00318 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672|GO:0006468
Cpe09g00318 655 Pfam Protein kinase domain 314 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe09g00318 655 SUPERFAMILY Protein kinase-like (PK-like) 296 589 IPR011009 -
Cpe09g00318 655 Gene3D Transferase(Phosphotransferase) domain 1 390 610 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00318 - - - bhj:120081441 1000.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00318 Cpe-Chr9:1891216 Cpe13g01140 Cpe-Chr13:9070975 1.31E-152 dispersed
Cpe18g00696 Cpe-Chr18:6922562 Cpe09g00318 Cpe-Chr9:1891216 4.15E-130 wgd
Cpe20g00131 Cpe-Chr20:727800 Cpe09g00318 Cpe-Chr9:1891216 2.11E-12 wgd
Cpe04g01393 Cpe-Chr4:11263862 Cpe09g00318 Cpe-Chr9:1891216 1.73E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g348 . . . . . . . . . . . . . . . Cpe09g00318 . Bhi07g01294 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007318 0 3 0 0 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 2 1 0 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62594 PF00069 Pkinase 1.80E-48 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00318 Cpe_Chr09 FPKM 0.0 1.398534 0.297462 0.965038 0.527554 1.094607 0.0 0.878329 0.344758 0.7147