Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00322 ATGGCTTCCGGCGGCGGTGAGGTTGAAGTCAAGGACGTGTTTATAGGAGCAGGCTGTAACAGAATAGTGAACAACGTTTCTTGGGGAGCCTGTGATTTGGTGGCTTTTGGCGCTCAAAACGCCGTCGCTATTTTCTGTCCCAAGTCTGCACAAATATTGACGACTCTTCCCGGTCACAACGCCTCTGTAAACTGCACTCATTGGCTTCCAAGTAGCAAGTTTGCGTTCAGAGCAAAGCATTTGAACTGTCATTATCTGCTTTCTGGTGATTCTGATGGTGCCATTCATTTATGGGAATTTACGCTTCTGAACCAGAAGTGGAGAAATGTTTTACAACTACCAAAATCACACAAGAAAGGCGTCACATGTATTACTGCACATATAATTTCTGAAACCGCAGCAATTGTTGCGTCTTCTTCTTCAGATGGTTCAGTTTGTGTCTGGGAGGTTTCTTTTCCGTCTACCAATGAAGGTGATTGTACATTGCTGTTGCTTGACACACTCTTGGTTGGTTCAAAATCTATGGTGGCACTTTCATTAGCAGAGTTGCCTGGAAATGCCAGTCATATGGTATTGGCAATGGGAGGTTTGGATAATAAGATTCATCTATATTGTGGGAAGAGAACTGGAGAGTTCGTCAAGGCATGTGAGCTAAAAGGACACACGGATTGGATTAGAAGTCTGGACTTCTCTTTGCCCATGTGCAAAACTGGAGAAGAAAATAGCATTATGCTTGTAAGTTCATCTCAGGACAGAGGCATACGCATATGGAAGATGGCTCTTCATGGTTCTTTGGCCAACATGAATGGAGGATGCAAAAAAGAGGAAATAAGTTTAACATCTTATATACAAGGTCCTATATTTGCTTCTGGACCATCAACTTACCAGGTATCATTAGAATCTCTTTTGATTGGACATGAGGATTGGGTATATTCGGTCCAATGGCAGCCTCCTTCAGCAGCAGAAACAGAAGGGGTTCCCTGCTATCAATCTGAAAGCATCTTATCTGCATCTATGGACAAGACAATGATGATTTGGAAACCTGAAAAGACTTCTGGGATCTGGATGAATGTGGTTACTGTTGGAGAGTTAAGTCATTCTGCTTTAGGGTTTTATGGTGGGCATTGGAGCCCTAACGGAGATTCAATTTTAGCACATGGTTATGGTGGGTCTTTTCATCTCTGGAGGGATGTTGGTATCAGTTCAGGTAACTGGAAACCTCAAAAGGTTCCCTCAGGACACTTTGCAGCTGTAATGGATATTTCATGGGCCAGATCTGGTGATTATTTTGTTTCAGTCAGTCATGACCAGACAACTCGGATTTTTTCTCCCTGGAAAAATGTAAATTCTCTTGAAGGAGGTTCTTGGCATGAAATAGCTCGACCTCAAGTCCATGGGCATGATATTAATTGTGTCACCTTAATTCAAGGAAAGGGGAACCATCGCTTTGTCAGTGGAGCAGAAGAGAAAGTTGCTAGAGTCTTTGAAGCCCCATTATCTTTTCTAAAGACGTTGAGTCATGCCACACAGCAGAATTTTGTGGCCACGGAAGATCATCTTGTGGATGTTCAGATTTTGGGCGCTAATATGTCGGCTCTTGGGCTCTCACAGAAGCCTATTTATGTTCACTCTGCTAATAAGACTCCGGACAGGAGTGGAAATGAAGGTCTTGACACCCTTGAAACCATTCCCGATGCAGTTCCTGTTGTTCTGACTGAACCTCCCATTGAAGATCAACTAGCATGGCATACACTTTGGCCAGAGTCGCACAAACTTTATGGTCATGGAAATGAGCTATTTTCTCTTTGTTGTGATCACAAGGGGAAGCTTGTTGCTTCATCCTGTAAGGCACAAACTGCATCAGTAGCAGAAATATGGCTTTGGGAAGTTGGTTCGTGGAAGGCAGTTGGTCGTCTGCAATCGCACAGCTTAACAATAACACAAATGGAGTTTTCCCGTGATGACAGCATGCTGTTGGCAGTCTCAAGGGATCGCCAGTTTTCTGTTTTTAAAATCCAGAGAACAGGCTCTGATGAAATCCACCATGAGCTTATATCAAGGCAGGAGGCACACAGAAGAATCATATGGTCATGTTCTTGGAATCCATTTGGTCATGAGTTCGCAACAGGCTCTAGGGATAAGACTGTGAAGTTATGGACTGTGACACCTGATTCTTCAGTGAAGCAACTAGCAACTTTGTCACAGTTCAAATCTAGCGTCACCGCCTTATCATGGGTCGGTCTTGATCCTGAGAGCAATGGACTCCTTGCAGTTGGAATGGAAAATGGCCTCCTTGAGCTGTGGAGTTTATCTATCAAAAGAACCGAAGGAGTTAGCTCAAATGTGGTTGCTTCAGTCGTAAAACGTCTCGATCCATTTGTGTGCCACGTTTCCTCGGTCAACTGTTTGTCATGGAGGGAACCAGAGGAGGAGATGGAAGAGTGCAGGAAGCTGCAGCTTGCTTCCTGTGGGGCTGACCACTGTGTTAGAGTGTTTGAGGTAAAAGTTTCTGTATGA 2517 44.02 MASGGGEVEVKDVFIGAGCNRIVNNVSWGACDLVAFGAQNAVAIFCPKSAQILTTLPGHNASVNCTHWLPSSKFAFRAKHLNCHYLLSGDSDGAIHLWEFTLLNQKWRNVLQLPKSHKKGVTCITAHIISETAAIVASSSSDGSVCVWEVSFPSTNEGDCTLLLLDTLLVGSKSMVALSLAELPGNASHMVLAMGGLDNKIHLYCGKRTGEFVKACELKGHTDWIRSLDFSLPMCKTGEENSIMLVSSSQDRGIRIWKMALHGSLANMNGGCKKEEISLTSYIQGPIFASGPSTYQVSLESLLIGHEDWVYSVQWQPPSAAETEGVPCYQSESILSASMDKTMMIWKPEKTSGIWMNVVTVGELSHSALGFYGGHWSPNGDSILAHGYGGSFHLWRDVGISSGNWKPQKVPSGHFAAVMDISWARSGDYFVSVSHDQTTRIFSPWKNVNSLEGGSWHEIARPQVHGHDINCVTLIQGKGNHRFVSGAEEKVARVFEAPLSFLKTLSHATQQNFVATEDHLVDVQILGANMSALGLSQKPIYVHSANKTPDRSGNEGLDTLETIPDAVPVVLTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHKGKLVASSCKAQTASVAEIWLWEVGSWKAVGRLQSHSLTITQMEFSRDDSMLLAVSRDRQFSVFKIQRTGSDEIHHELISRQEAHRRIIWSCSWNPFGHEFATGSRDKTVKLWTVTPDSSVKQLATLSQFKSSVTALSWVGLDPESNGLLAVGMENGLLELWSLSIKRTEGVSSNVVASVVKRLDPFVCHVSSVNCLSWREPEEEMEECRKLQLASCGADHCVRVFEVKVSV 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1920747 1927079 + Cp4.1LG09g03190.1 Cpe09g00322 474688

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00322 838 Pfam WD domain, G-beta repeat 51 98 IPR001680 GO:0005515
Cpe09g00322 838 Pfam WD domain, G-beta repeat 405 442 IPR001680 GO:0005515
Cpe09g00322 838 Pfam WD domain, G-beta repeat 303 347 IPR001680 GO:0005515
Cpe09g00322 838 Pfam WD domain, G-beta repeat 792 832 IPR001680 GO:0005515
Cpe09g00322 838 Pfam WD domain, G-beta repeat 690 719 IPR001680 GO:0005515
Cpe09g00322 838 Pfam WD domain, G-beta repeat 113 148 IPR001680 GO:0005515
Cpe09g00322 838 Pfam WD domain, G-beta repeat 217 258 IPR001680 GO:0005515
Cpe09g00322 838 ProSiteProfiles Trp-Asp (WD) repeats profile. 218 259 IPR001680 GO:0005515
Cpe09g00322 838 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 688 721 - -
Cpe09g00322 838 SUPERFAMILY WD40 repeat-like 23 395 IPR036322 GO:0005515
Cpe09g00322 838 Gene3D - 372 685 IPR015943 GO:0005515
Cpe09g00322 838 Gene3D - 686 837 IPR015943 GO:0005515
Cpe09g00322 838 SMART WD40_4 455 496 IPR001680 GO:0005515
Cpe09g00322 838 SMART WD40_4 681 720 IPR001680 GO:0005515
Cpe09g00322 838 SMART WD40_4 726 769 IPR001680 GO:0005515
Cpe09g00322 838 SMART WD40_4 357 396 IPR001680 GO:0005515
Cpe09g00322 838 SMART WD40_4 296 347 IPR001680 GO:0005515
Cpe09g00322 838 SMART WD40_4 632 671 IPR001680 GO:0005515
Cpe09g00322 838 SMART WD40_4 404 443 IPR001680 GO:0005515
Cpe09g00322 838 SMART WD40_4 49 99 IPR001680 GO:0005515
Cpe09g00322 838 SMART WD40_4 585 629 IPR001680 GO:0005515
Cpe09g00322 838 SMART WD40_4 106 149 IPR001680 GO:0005515
Cpe09g00322 838 SMART WD40_4 786 833 IPR001680 GO:0005515
Cpe09g00322 838 SMART WD40_4 211 258 IPR001680 GO:0005515
Cpe09g00322 838 Gene3D - 2 173 IPR015943 GO:0005515
Cpe09g00322 838 Gene3D - 174 363 IPR015943 GO:0005515
Cpe09g00322 838 PRINTS G protein beta WD-40 repeat signature 136 150 IPR020472 -
Cpe09g00322 838 PRINTS G protein beta WD-40 repeat signature 245 259 IPR020472 -
Cpe09g00322 838 PRINTS G protein beta WD-40 repeat signature 707 721 IPR020472 -
Cpe09g00322 838 PANTHER WD REPEAT-CONTAINING 7 836 - -
Cpe09g00322 838 SUPERFAMILY WD40 repeat-like 685 834 IPR036322 GO:0005515
Cpe09g00322 838 PANTHER ELONGATOR COMPLEX PROTEIN 2 7 836 - -
Cpe09g00322 838 ProSiteProfiles Trp-Asp (WD) repeats profile. 688 729 IPR001680 GO:0005515
Cpe09g00322 838 SUPERFAMILY WD40 repeat-like 191 727 IPR036322 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00322 K11374 ELP2; elongator complex protein 2 - csv:101209018 1538.86
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01327 Cpe09g00322 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00322 Cpe-Chr9:1920747 Cpe08g01016 Cpe-Chr8:7819926 5.23E-07 dispersed
Cpe01g01327 Cpe-Chr1:7991857 Cpe09g00322 Cpe-Chr9:1920747 9.64E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g358 . . . . . . Bma14g01910 . . Cmo18g01004 . Cma18g00995 . Car18g00918 Sed06g1949 Cpe09g00322 Cpe01g01327 Bhi07g01286 Tan04g0812 Cmetu10g0150 Lac13g0532 Hepe01g1164 . . Cla05g02273 Cam05g2443 Cec05g2464 Cco05g2508 Clacu05g2438 Cmu05g2301 Cre05g2419 . . Cone6ag0423 Cone9ag0445 Lsi04g00222 Csa05g02643 Chy10g01176 Cme10g00228 . . Bda07g01725 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011732 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00322 Cpe_Chr09 FPKM 3.335048 2.93358 76.565315 71.2659 0.0 0.0 0.0 1.288503 0.862408 0.755002