Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00327 ATGGAGAGAAGTTGTGAATTCTGTGCTGCACTAAGGCCAATTATTTACTGTACGCCTGATGCAGCTCACCTTTGTCTTTCCTGTGATGCAAAAGTTCATTCAGCTAATGCACTTTCGAGTCGACATCTTCGGACTCTCTTGTGCGAATCGTGCCGAAGTTTCCCTTCCTATCTTCAGTGTTTAGATCATCGAATGTTCTTGTGTCGTAGCTGTGACCGAGCGCTTCATGTTGCCTCGTCCCAACACCAGAAAAAGATTATCAGAGGATACATGGGATGTCCTTCAGCCAAGGATTTTGCACAACTTTGGGGTTTTCATGTCAATGAAGTTGACAAAGATAAGTTTGTGTCCACTTCTGCCTCTGATACTTCCGGTGTTATGGCTTTCGACACAGCGGGACGAAGCTGTTCGCGTATAGCTGGAGTGGCTCGAATGAGCTATCCCCCTCATACTGAAGCTGAAAACAAGATGCTTTACAAAGGTCAAGAAAAGAGCAGTTCATTCATTTTTCAACAAATTCTAGACTTGAGTCGTCTCCAGCTTATAAAGAAGAATAACGATTCGCCTTTGATTCTTGGTGACGAAAAAGATGGCGCATTTTCTTTAAGGCCTTGTGCGTCGGAGAAGTTCGAGCGATCTCTTAATCAACACCTGCACCCTTCCGAGGACCGGGGTACTGAACTTCAGCAAAAGGACGGTTCACTTCAGGAGCAGAAAATGATATCGTTTACTCAGCTCGAGAATTTTCCATTGTCATCCCCTATTTTGATTCCTTTCCATGGAGAATCCCTTTGGCATTGTAAAAGCCCAGCTGAAAGTAGTCAGCTATGGTCTCAAAATATGCAAGATCTTGGAGTTTGTGATGAGCTTGTTTGTCGCGATGATTTCAACATACCTGAAGCAAGCTCAGGTAGGTCGACATCTTACATCTTCCCATCGGATCTTATGGACAAAGATAGTGATGATCCCTCAGGTGAAGCTTGTAAGCCTCCCACGAGTACAACCACGGAACGTGCTCGTCCAATCCGACCCTCCTTTTCAACTTTGTCATTTGTTAATTCAAGGATGAGTGTTGACACTGCAAGTACTGGTTGCCCTGATGGGGCTGGAGGCGAGCCTTCATGCAGCTCGCCTTACCGTCGTGAGCGTAAACAGTCCGTGCCCCTCAACGACCACGCTGCAACAAGAGGGTACAAAGAAAATCAGCAATCTCAACAGCAAGAAGAGAAACAAATTCGACGAAAGGGCAGATCTCTCATGAAGAAACGAGTAAAGGGTCGATACGAAGAAGGCGAGCGATATGACTCGAATGTCGTTGCTATCAGTCGAAGTTACTGA 1338 45.59 MERSCEFCAALRPIIYCTPDAAHLCLSCDAKVHSANALSSRHLRTLLCESCRSFPSYLQCLDHRMFLCRSCDRALHVASSQHQKKIIRGYMGCPSAKDFAQLWGFHVNEVDKDKFVSTSASDTSGVMAFDTAGRSCSRIAGVARMSYPPHTEAENKMLYKGQEKSSSFIFQQILDLSRLQLIKKNNDSPLILGDEKDGAFSLRPCASEKFERSLNQHLHPSEDRGTELQQKDGSLQEQKMISFTQLENFPLSSPILIPFHGESLWHCKSPAESSQLWSQNMQDLGVCDELVCRDDFNIPEASSGRSTSYIFPSDLMDKDSDDPSGEACKPPTSTTTERARPIRPSFSTLSFVNSRMSVDTASTGCPDGAGGEPSCSSPYRRERKQSVPLNDHAATRGYKENQQSQQQEEKQIRRKGRSLMKKRVKGRYEEGERYDSNVVAISRSY 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1964540 1967585 + Cp4.1LG09g03240.1 Cpe09g00327 474693

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00327 445 ProSiteProfiles Zinc finger B-box type profile. 43 87 IPR000315 GO:0008270
Cpe09g00327 445 MobiDBLite consensus disorder prediction 303 345 - -
Cpe09g00327 445 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 300 - -
Cpe09g00327 445 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 300 - -
Cpe09g00327 445 SMART bboxneu5 1 47 IPR000315 GO:0008270
Cpe09g00327 445 SMART bboxneu5 48 87 IPR000315 GO:0008270
Cpe09g00327 445 MobiDBLite consensus disorder prediction 358 433 - -
Cpe09g00327 445 CDD Bbox1_BBX-like 5 47 - -
Cpe09g00327 445 MobiDBLite consensus disorder prediction 327 345 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00327 - - - bhj:120081570 651.744
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00327 Cpe-Chr9:1964540 Cpe16g00455 Cpe-Chr16:5785162 7.67E-24 dispersed
Cpe09g00327 Cpe-Chr9:1964540 Cpe03g01212 Cpe-Chr3:9897821 7.13E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g369 . . . . . . . . . Cmo18g00997 . Cma18g00990 . Car18g00911 . Cpe09g00327 . Bhi07g01277 . . . . . . Cla05g02266 Cam05g2436 Cec05g2456 Cco05g2500 Clacu05g2430 Cmu05g2293 Cre05g2411 . . . . Lsi04g00215 Csa05g02652 Chy10g01184 Cme10g00220 Blo06g01044 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009707 1 4 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 2 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00327 Cpe_Chr09 FPKM 33.381054 29.573465 62.598579 65.884705 11.088623 9.297541 13.080482 73.994179 80.827393 98.937462