Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00328 ATGCCATATCCTCATCTTCTTCCTTCTCTTCAATTCTCCAAACCTCCAAAACCCTCCCATTCTTTTCCTCATTTCGCAATGAAGGACCGCTCTCCTTCCTCCAATGCCGCCGTCTACGTCCCTCCTCACCTCCGTCTCCGCTTCGTTCTTACTTCTTCCAATCATTCCCCTACTGTTTCCGCTGTTCACTGCAAGATTCGCCAGGCGGAGGCTCCTGCTCCGCCTTCTCTGCACGCTCCTTCTCAGGAACTGTTCGATTCCGCCTATCGCAATAGGGCTCCGGTCGAGAGTCAGGATTGTAATTTTGAGTTTTCGAATCAATCGTATGTGAACATGTACCTTGATTTGATACGTTTTCTAGTTTTTATTTACTTTCTTACAAGATTGTATGATAATTTCTTGAAATATTTACAGGGTGTTTCACCTGCCGTCAATATTGATTTGTGGAAAAGAAAGTTGGCATTACTCTTACGTGACAAGGACATGCAAGAGGTAGTTTCAAGGGAAAAAAAAGATAGACATGATTTTGAGCAATTAGCTGCTTTGGCGAGTAGCATGGGACTTTTTAGCCATCTATATGCCAAAGTTGCGGTTTTTAGTAAGGTCCCATTGCCGAACTACAGATTTGATTTGGATGATCGGCGTCCACTGAGGGAGGTCTCTTTGCCTCCTTGGTTGCTTAGAAGAGTAGATGAACATCTGGGAGAGTTTCTCTCTCAGAAGTCTAGGTTTGAAGGTTTTCAAGATATCTCTGACTATAGATCAATTAGCAGTGGTGGCATTGCTACAGATGAAGGGCTTTTTGAGCAACCTGAGCTACAAGCATCTAGTAAGGCTGTGATGGAACAAATTCTTCGGCGAAGAAGTTTGCATCTGCGTGAACAACAGCATGCTCGGCAGTCATCTCCTGAAGGAAGAGAAATGCTGGAGTTTCGGAAAAGTCTCCCTGCTTACAAGGAGAAGGATGCAATATTGACCACAATCTCACAGAATCAGCTGTCATGGAATGGCATTCTCATAATCATAAATTTAGTAGCCAAAGCTGCAGTTCATTACCCTGTACAACACATCTATCCTAGAGGAAGGGCTAAGGTTACTATTATATCAGGTGAAACTGGTTGTGGCAAGACTACGCAAGTTCCCCAATTCATTTTGGAATCAGAAGTAGAATCACTTCGTGGAGCTGGTTGCAGCATCGTATGTACACAGCCAAGACGAATATCTGCTATGTCTGTCTCTGAGAGAGTCGCTTCTGAGAGAGGGGAGAAATTGGGTGAATCTGTTGGTTATAAAGTGCGGCTGGAGGGTATAAAGGGGAGGGAGACTCATCTACTCTTTTGTACCACGGGCATCTTGTTGAGAAGATTGTTGGTTGATAGAAATTTGAAAGGCATAACTCATGTTATTGTTGACGAAATCCATGAACGTGGAATGAATGAAGATTTTCTGCTTATTGTCCTGAAAGATCTCCTTCCTCGGCGGCCAGAATTGAGGTTGATTCTAATGAGTGCAACTTTAGATGCTGAACTTTTCTCATCCTACTTTGGCGGTGCTCAAATTATTCACATTCCGGGATTCGCACACCCTGTCCGAACTCATTTTCTGGAGGATATTCTAGAAATGACGGGTTACAGATTAACTCCATACAATCAAATAGATGATTATGGTCAAGAGAAGACATGGAAAATGAGCAAACAAGCACCAAGAAAGAGGAAAACCCAGATTGCCTCCTCTGTTCAGGAAACACTTATGGCAGCTGATTTTAAGGAGTACAGTCTTCAAACTCAGGAGTCTTTATCGTCTTGGAATCCTGATTGTCTTGGTTTTAATCTCATTGAATATCTCCTAGTCCGCATATGTGAGAGTGAAATACCTGGAGCTATTCTTGTTTTTATGACTGGGTGGGATGACATCAGTTCTCTGAAAGAGAAACTTCAGTCTCACCCTTTATTAGGAGATCCAACTCGTGTATTGTTGTTGGCTTGCCATGGTTCAATGGCCAGTTCAGAGCAGAGGTTAATATTTATCGAACCTGACAAGGGAATGAGAAAGATAGTGCTTGCAACAAATATTGCTGAGACAAGTATCACTATAAACGATGTTGTGTATGTTCTGGACTGTGGAAAGGCAAAAGAAACATCGTATGATGCTTTAAATAACACTTCTTGTTTGCTTCCCTCATGGATATCCAAGGTTTCTGCTCAACAAAGAAGAGGAAGGGCTGGCCGTGTTCAACCAGGCGAATGTTATCATCTATACCCTAGGTGTGTGTTTAATGCTTTTGCGGAGTATCAGCTGGCAGAAATTTTGAGAACACCTTTACAGTCCCTCTGCTTGCAAATAAAAAGCCTAAAGCTTGGAAGTATATCGAAGTTTCTATCTAGGGCTTTGCAGTCACCAGAGCCCCTAGCGGTTCAGAATGCTATTGAATATTTGAAGATCATTGGAGCATTTGATGAGAATGAAAATCTTACTGTATTAGGTCGTTATTTGATTTTGCTCCCAATGGAGCCAAAACTGGGAAAGATGTTGATATTAGGTGCTATTCTCAATTGTTTGGATCCAATTTTGACCATTGTTGCTGGCCTCAGTGTGAGGGACCCTTTCCTAATGCCACTGGAGAAGAAGGATGCTGCAGAGGCTGCAAAGTCCCAATTTTCACAAGATCATAGTGATCACCTTGCTATCATCCGGGCTTATAGGGGATGGAAAGAAGCAGAGAGGAACTTTGGTGGATATGACTTCTGTTGGAAGAACTTCCTTTCTGTACAATCAATGAAGGCTATTGATTCACTGAGGAAGGAGTTTTTCTCCTTGCTTAGAGATACTGGCTTGGTTGATGGGTACTTGGACTCCTACAATGCTTGGAGTCTTGATGAACATCTCATACGTGCAGTTATTTGCTATGGCCTATATCCTGGAGTTTGCTCTATTGTGCATAACGAGAAGTCATTTTCTCTCAAAACTATGGAGGATGGCCAGGTGCTTCTCTATTCGAACTCGGTCAACGCCCGAGAGTCGCGGATTCCATATCCATGGCTAGTATTCAATGAGAAGATAAAAGTGAACTCTATTTTCCTTCGAGATTCAACAGCTATTTCTGACTCAATGCTGCTTCTCTTTGGTGGAAACATCTCAAAGGGTGATCATGATGGACACTTGAAAATGTTGAGCGGTTTTTTGGAATTTTTTATGAAACCTGATGTAGCTGAGATGTATCAGAAATTAAGATTGAAACTTGAAGAGCTTATACAGAAGAAACTACTAAATCCAAAGATGGACTTGCACTCCCACCATGAGCTCCTATCTGCTGTACGCTTGCTTATTTCAGAAGATCAGTGTGAAGGTCGATTCGTTTTTGCACGCCAGATCTTTCAGCAGCCCTCCATGGCATCTACTACTTTGGCAGCGGCACCAACTTCTGTTTCAAGAACTGAAAGTCGACCTGGTGGTGACAATTCTAAAAGTCAGCTCCAGACATTACTAACGAGGGCTGGATATGCTGCACCCACCTACAAGACTATGCAATTGAAGAACAATCAATTTCGAGCAACTGTGGAATTTAATGGACTGCAAATTATGGGACAACCTTGTACCAACAAAAAGAATGCAGAAAAGGACGCAGCAGCTGAGGCTCTTGAGTGTTTGATGGGTGGAACTCGGTTGGGGCACGAGTATATCAATCAAATGTCTCTGATGCTAAAAAGGAACAAGAAGGATCATAACTAA 3729 42.53 MPYPHLLPSLQFSKPPKPSHSFPHFAMKDRSPSSNAAVYVPPHLRLRFVLTSSNHSPTVSAVHCKIRQAEAPAPPSLHAPSQELFDSAYRNRAPVESQDCNFEFSNQSYVNMYLDLIRFLVFIYFLTRLYDNFLKYLQGVSPAVNIDLWKRKLALLLRDKDMQEVVSREKKDRHDFEQLAALASSMGLFSHLYAKVAVFSKVPLPNYRFDLDDRRPLREVSLPPWLLRRVDEHLGEFLSQKSRFEGFQDISDYRSISSGGIATDEGLFEQPELQASSKAVMEQILRRRSLHLREQQHARQSSPEGREMLEFRKSLPAYKEKDAILTTISQNQLSWNGILIIINLVAKAAVHYPVQHIYPRGRAKVTIISGETGCGKTTQVPQFILESEVESLRGAGCSIVCTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGIKGRETHLLFCTTGILLRRLLVDRNLKGITHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLDAELFSSYFGGAQIIHIPGFAHPVRTHFLEDILEMTGYRLTPYNQIDDYGQEKTWKMSKQAPRKRKTQIASSVQETLMAADFKEYSLQTQESLSSWNPDCLGFNLIEYLLVRICESEIPGAILVFMTGWDDISSLKEKLQSHPLLGDPTRVLLLACHGSMASSEQRLIFIEPDKGMRKIVLATNIAETSITINDVVYVLDCGKAKETSYDALNNTSCLLPSWISKVSAQQRRGRAGRVQPGECYHLYPRCVFNAFAEYQLAEILRTPLQSLCLQIKSLKLGSISKFLSRALQSPEPLAVQNAIEYLKIIGAFDENENLTVLGRYLILLPMEPKLGKMLILGAILNCLDPILTIVAGLSVRDPFLMPLEKKDAAEAAKSQFSQDHSDHLAIIRAYRGWKEAERNFGGYDFCWKNFLSVQSMKAIDSLRKEFFSLLRDTGLVDGYLDSYNAWSLDEHLIRAVICYGLYPGVCSIVHNEKSFSLKTMEDGQVLLYSNSVNARESRIPYPWLVFNEKIKVNSIFLRDSTAISDSMLLLFGGNISKGDHDGHLKMLSGFLEFFMKPDVAEMYQKLRLKLEELIQKKLLNPKMDLHSHHELLSAVRLLISEDQCEGRFVFARQIFQQPSMASTTLAAAPTSVSRTESRPGGDNSKSQLQTLLTRAGYAAPTYKTMQLKNNQFRATVEFNGLQIMGQPCTNKKNAEKDAAAEALECLMGGTRLGHEYINQMSLMLKRNKKDHN 1242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1974411 1986309 + Cp4.1LG09g03220.1 Cpe09g00328 474694

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00328 1242 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 363 1154 - -
Cpe09g00328 1242 SMART DRBM_3 1154 1217 IPR014720 -
Cpe09g00328 1242 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1153 1218 IPR014720 -
Cpe09g00328 1242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 910 IPR027417 -
Cpe09g00328 1242 Pfam DEAD/DEAH box helicase 364 507 IPR011545 GO:0003676|GO:0005524
Cpe09g00328 1242 PANTHER ATP-DEPENDENT RNA HELICASE 139 333 - -
Cpe09g00328 1242 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 357 524 IPR014001 -
Cpe09g00328 1242 Gene3D - 1130 1221 - -
Cpe09g00328 1242 Gene3D - 787 898 - -
Cpe09g00328 1242 SMART ultradead3 338 538 IPR014001 -
Cpe09g00328 1242 MobiDBLite consensus disorder prediction 1136 1157 - -
Cpe09g00328 1242 Gene3D - 268 525 IPR027417 -
Cpe09g00328 1242 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 139 333 - -
Cpe09g00328 1242 CDD SF2_C_RHA 528 753 - -
Cpe09g00328 1242 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 611 785 IPR001650 -
Cpe09g00328 1242 Pfam Helicase associated domain (HA2) 808 885 IPR007502 GO:0004386
Cpe09g00328 1242 SMART ha2_5 807 897 IPR007502 GO:0004386
Cpe09g00328 1242 Pfam Double-stranded RNA binding motif 1154 1214 IPR014720 -
Cpe09g00328 1242 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 963 1045 IPR011709 -
Cpe09g00328 1242 Pfam Helicase conserved C-terminal domain 613 744 IPR001650 -
Cpe09g00328 1242 SMART helicmild6 639 745 IPR001650 -
Cpe09g00328 1242 PANTHER ATP-DEPENDENT RNA HELICASE 363 1154 - -
Cpe09g00328 1242 Gene3D - 610 764 IPR027417 -
Cpe09g00328 1242 SUPERFAMILY dsRNA-binding domain-like 1150 1226 - -
Cpe09g00328 1242 CDD DEXHc_RHA-like 365 523 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00328 K14442 DHX36, RHAU; ATP-dependent RNA helicase DHX36 [EC:3.6.4.13] - csv:101208774 1919.05
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01321 Cpe09g00328 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01304 Cpe-Chr1:7837605 Cpe09g00328 Cpe-Chr9:1974411 0 dispersed
Cpe09g00328 Cpe-Chr9:1974411 Cpe14g00330 Cpe-Chr14:1976922 2.69E-147 dispersed
Cpe01g01321 Cpe-Chr1:7948447 Cpe09g00328 Cpe-Chr9:1974411 0 wgd
Cpe18g00690 Cpe-Chr18:6881291 Cpe09g00328 Cpe-Chr9:1974411 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g379 . . . . . . . . Cmo04g01553 Cmo18g00996 . Cma18g00989 Car04g01538 Car18g00910 Sed08g0382 Cpe09g00328 Cpe01g01321 Bhi07g01273 Tan04g0802 Cmetu02g0065 Lac13g0540 Hepe01g1156 . . Cla05g02265 Cam05g2435 Cec05g2454 Cco05g2498 Clacu05g2426 Cmu05g2292 Cre05g2409 Cone13ag0794 Cone19ag0798 . . Lsi04g00213 Csa05g02653 Chy10g01185 Cme10g00219 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001665 2 2 2 3 2 2 3 2 2 2 2 2 3 2 3 3 2 3 3 2 2 1 2 2 2 2 2 6 2 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00328 Cpe_Chr09 FPKM 16.953398 21.083799 14.293799 14.411677 18.932518 20.551973 19.309656 15.322495 15.197779 14.146743