Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00336 ATGTCTCGGACACTTTTGGTTTTGATTGTGTGTCTGAGTGCGTTGAGGTTTGGAACTTCGTTGGGATCGCGTTCGATCCTTAGAACGGTTGCTGATAAGAACGGGGATTCTGAAGACTACGCCATTGATTTGAACGCCACCAATTTCGATGCGGTTTTTAGGGATGCTCCAGCCTCCTTTGCGGTCGTTGAATTCTTTGCTCACTGGTGCCCTGCTTGCAGAAACTATAAGCCCCATTATGAAAGAGTTGCTAGGCTTTTCAATGGACCTAATGCTGTGCACCCAGGGAAAGTATTAATGACAAGAGTTGACTGCGCATTGAAGTCCTTGTCGTTTACTTGTCTGCCAGCACAGATGAATACCAATCTCTGTGATAAATTTTCGGTGGGTCACTTTCCTATGCTCTTTTGGGGTCCTCCTTCCAACTTTGTGTCTGGTAGTTGGAATCCTAAGGAAGAGAAAAGTGAAATTCGTAACATCGATGATGGACGGACTGCTGAGAAGTTACTAAATTGGATGAACAAGCAAATGGGCAGCTCATATGGCTTGGATGACCAAACATTTGAAAATGAGCATCTGTCATCCAATATCTCAGATCCAGGACAGATTGCTCGAGCAGTCTATGATGTTGAGGAGGCAACATCCACTGCCTTTGATATTATCTTGGAACACAAGATGATCAACTCTGAAACTCGAGCACCCTTTATAAAATTTCTTCAACTTCTGGTGGTTCATCATCCTTCTGTGAGGTGTCGAAGAGGTAGCGCTGAGATACTTGTAAACTTCGACGAGTTGAGCCTTGCAGATATGAAACAAGAAGAGGTTGCTAGTGAAAAAGGTGCAGTTAAAAACTTTCAAATATGTGGAAAAGATGTTCCTCGTGGATATTGGATTTTCTGCCGCGGTAGCAAGAACGATACGAGGGGATTTAGTTGTGGATTATGGGTTCTACTGCATTCTCTTTCTGTGAGAATTGAGGACGGAGAAAGCCAGTTTGCGTTCACAGCTATATGCGATTTCATCCGTAACTTCTTCGTTTGCGAGGAATGTCGTCAGCACTTTCACGAAATGTGTTCGAGTGTGTCTAGTCCTTTCAACAAAGCTCGTGACTTTGCCCTCTGGTTGTGGAGGGCACACAACAAAGTCAATGAAAGATTATTAAAAGAAGAAGAATCCATGGGAACCGCAGACCCGAAATTTCCCAAGATGATCTGGCCTCCGCCGCAACTTTGCTCATCTTGCTATCTCTCTCACAGCAGCAAGCAGATAAAATGGGACGAGAATGTAGTACATAAATTCTTGACCAACTACTATGGTAAAATGCTTGTATCTCTATACAAAAGCAACAGTTCTCTTGGGAATGTTGGTGTCGATGGGGCACTCGACGAGTTAGCGACATCAACAAACGCAGTTGCAGTCCCGGTGGGGGCTGCTTTGGCAATCGCTCTTGCAAGCTGTGCCTTCGGAGTACTTGCGTGTTACTGGCGTTCGCAGCAGAAGAGTCGGAAGTATTACCACCAACGACATTCTTTAAAGAAATATGATTATTAG 1551 44.36 MSRTLLVLIVCLSALRFGTSLGSRSILRTVADKNGDSEDYAIDLNATNFDAVFRDAPASFAVVEFFAHWCPACRNYKPHYERVARLFNGPNAVHPGKVLMTRVDCALKSLSFTCLPAQMNTNLCDKFSVGHFPMLFWGPPSNFVSGSWNPKEEKSEIRNIDDGRTAEKLLNWMNKQMGSSYGLDDQTFENEHLSSNISDPGQIARAVYDVEEATSTAFDIILEHKMINSETRAPFIKFLQLLVVHHPSVRCRRGSAEILVNFDELSLADMKQEEVASEKGAVKNFQICGKDVPRGYWIFCRGSKNDTRGFSCGLWVLLHSLSVRIEDGESQFAFTAICDFIRNFFVCEECRQHFHEMCSSVSSPFNKARDFALWLWRAHNKVNERLLKEEESMGTADPKFPKMIWPPPQLCSSCYLSHSSKQIKWDENVVHKFLTNYYGKMLVSLYKSNSSLGNVGVDGALDELATSTNAVAVPVGAALAIALASCAFGVLACYWRSQQKSRKYYHQRHSLKKYDY 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2031714 2037536 + Cp4.1LG09g03320.1 Cpe09g00336 474702

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00336 516 SUPERFAMILY FAD-dependent thiol oxidase 304 407 IPR036774 GO:0016972
Cpe09g00336 516 SUPERFAMILY Thioredoxin-like 41 178 IPR036249 -
Cpe09g00336 516 ProSiteProfiles ERV/ALR sulfhydryl oxidase domain profile. 303 405 IPR017905 GO:0016972
Cpe09g00336 516 PANTHER QUIESCIN Q6-RELATED SULFHYDRYL OXIDASE 15 506 IPR039798 GO:0016971
Cpe09g00336 516 ProSiteProfiles Thioredoxin domain profile. 19 178 IPR013766 -
Cpe09g00336 516 Gene3D Glutaredoxin 28 198 - -
Cpe09g00336 516 Pfam Thioredoxin 43 106 IPR013766 -
Cpe09g00336 516 ProSitePatterns Thioredoxin family active site. 62 80 IPR017937 -
Cpe09g00336 516 PANTHER SULFHYDRYL OXIDASE 15 506 - -
Cpe09g00336 516 Pfam Erv1 / Alr family 312 406 IPR017905 GO:0016972
Cpe09g00336 516 Gene3D ERV/ALR sulfhydryl oxidase domain 298 446 IPR036774 GO:0016972
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00336 K10758 QSOX; thiol oxidase [EC:1.8.3.2] - csv:101211805 872.848
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01311 Cpe09g00336 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00336 Cpe-Chr9:2031714 Cpe17g00761 Cpe-Chr17:5992357 8.37E-08 dispersed
Cpe01g01311 Cpe-Chr1:7885090 Cpe09g00336 Cpe-Chr9:2031714 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g398 . . . . . . . . Cmo04g01541 Cmo18g00987 . Cma18g00980 Car04g01528 Car18g00902 . Cpe09g00336 Cpe01g01311 . . . . . . . Cla05g02257 Cam05g2424 Cec05g2441 Cco05g2486 Clacu05g2413 Cmu05g2280 Cre05g2398 Cone13ag0784 Cone19ag0787 . . Lsi04g00200 Csa05g02669 Chy10g01198 Cme10g00203 Blo06g00991 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003860 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 0 1 1 1 1 1 2 9 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00336 Cpe_Chr09 FPKM 45.884537 47.27142 29.69157 31.222992 77.081108 80.385101 78.823982 2.917819 2.664233 2.346969