Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00348 ATGAACTCAGTTCTCATTTTCCTTCTCCTTCTCTCTCTCCGCCGCGCCGGAGCTTTCGATTCTCCTCCACCACCACCACCACCATCCGCCGACCTCTGTAAATCCACTCTCTACCCTAAGCTCTGCCGCTCCATTCTCTCCTCCATCCGATTCTCTCCCTCCGATCCCTACGGCTACGGGAAATTCTCCGTCAAGAACTGCCTCAAACAGGCGATCAAAATGTCGAGCGTAATCGGCGACTATCTCGATCGAGGAAGCGATTCGAGGCTGAATCAGCGGGAGGCCGGCGCTCTGGAAGATTGCAGAGATCTTTCCGATTCAAACGTGGAGTTTCTCCGGTCGATTGAGAGCGTATTGGAGGCGGCGAAGAGCGTGGATGAGGAACTAGTGGAGCGCGTTCAGAGTATTTTGAGCGCGATCGTCACGAACGGCCAGACTTGTATAGACGGATTGGTGGAATCGAGGAGTAGTTTGGGGAATGCGCTAACGGCGCCGATGTCGAGCGCCGGGCAACTGTACAGTGTGTCGTTGGGATTGGTTACGAACTCGTTGTCGCGACTGTGGAAGAAGCGGCGGATGAAGGGAGACGGAGGGGATTCCGCGGCGGGCGCGCGGAACAGAGAGCCTCTGAACACGCTGATCAAGGGACTACATAAAATGGGTTCATGCAACCAATCCACGGGCTGCTCAGGAAGGAAGCGTTTGTTGGCTGATTTAGGCACCACAGGAATCTTCATCAACGATACTGTGGTTGTTAGCTCTACTGGTGCAGACAACTTCACCTCAATTGGAGATGCTATTGCCTTTGCTCCCAACAATTCAATGCCTCAAGATGGCTACTTTGTTATCTATGTTAGAGGAGGATACTATGAAGAATACGTCGTCGTCCCCAAATACAAAACCAACATAATGCTCGTTGGTGATGGCATTAACCGAACCGTCATCACTGGGAACCATAGCGTTGTCGATGGTTGGACGACGTATAATTCCTCTACATTTAGAGCTAACACAAGCTTGAGGGTGGATTGGCCTGGCTATAGCTTGATGAATATTACTCAAGCTATGAACTTTACTGTCTATAATCTTACTATGGGAGATACATGGCTGCCTTACACTGATATTCCCTTCTCTGGTGGTTTGGTC 1143 50.83 MNSVLIFLLLLSLRRAGAFDSPPPPPPPSADLCKSTLYPKLCRSILSSIRFSPSDPYGYGKFSVKNCLKQAIKMSSVIGDYLDRGSDSRLNQREAGALEDCRDLSDSNVEFLRSIESVLEAAKSVDEELVERVQSILSAIVTNGQTCIDGLVESRSSLGNALTAPMSSAGQLYSVSLGLVTNSLSRLWKKRRMKGDGGDSAAGARNREPLNTLIKGLHKMGSCNQSTGCSGRKRLLADLGTTGIFINDTVVVSSTGADNFTSIGDAIAFAPNNSMPQDGYFVIYVRGGYYEEYVVVPKYKTNIMLVGDGINRTVITGNHSVVDGWTTYNSSTFRANTSLRVDWPGYSLMNITQAMNFTVYNLTMGDTWLPYTDIPFSGGLV 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2104944 2109803 + Cp4.1LG09g03490.1 Cpe09g00348 474714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00348 381 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 182 IPR035513 -
Cpe09g00348 381 SUPERFAMILY Pectin lyase-like 246 337 IPR011050 -
Cpe09g00348 381 TIGRFAM PME_inhib: pectinesterase inhibitor domain 29 180 IPR006501 GO:0004857
Cpe09g00348 381 PANTHER PECTINESTERASE 12 333 - -
Cpe09g00348 381 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 47-RELATED 335 380 - -
Cpe09g00348 381 Pfam Plant invertase/pectin methylesterase inhibitor 31 178 IPR006501 GO:0004857
Cpe09g00348 381 Gene3D - 244 338 IPR012334 -
Cpe09g00348 381 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 47-RELATED 12 333 - -
Cpe09g00348 381 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 183 IPR035513 -
Cpe09g00348 381 SMART PMEI_2 24 179 IPR006501 GO:0004857
Cpe09g00348 381 PANTHER PECTINESTERASE 335 380 - -
Cpe09g00348 381 Pfam Pectinesterase 250 336 IPR000070 GO:0030599|GO:0042545
Cpe09g00348 381 CDD PMEI-like_3 32 182 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g01301 Cpe09g00348 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00348 Cpe-Chr9:2104944 Cpe12g00918 Cpe-Chr12:7922749 8.00E-31 dispersed
Cpe17g00772 Cpe-Chr17:6075349 Cpe09g00348 Cpe-Chr9:2104944 8.41E-20 dispersed
Cpe02g00345 Cpe-Chr2:1861733 Cpe09g00348 Cpe-Chr9:2104944 8.71E-52 transposed
Cpe01g01301 Cpe-Chr1:7823500 Cpe09g00348 Cpe-Chr9:2104944 1.09E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00348 K01051 - csv:101206112 511.146