Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00348 ATGAACTCAGTTCTCATTTTCCTTCTCCTTCTCTCTCTCCGCCGCGCCGGAGCTTTCGATTCTCCTCCACCACCACCACCACCATCCGCCGACCTCTGTAAATCCACTCTCTACCCTAAGCTCTGCCGCTCCATTCTCTCCTCCATCCGATTCTCTCCCTCCGATCCCTACGGCTACGGGAAATTCTCCGTCAAGAACTGCCTCAAACAGGCGATCAAAATGTCGAGCGTAATCGGCGACTATCTCGATCGAGGAAGCGATTCGAGGCTGAATCAGCGGGAGGCCGGCGCTCTGGAAGATTGCAGAGATCTTTCCGATTCAAACGTGGAGTTTCTCCGGTCGATTGAGAGCGTATTGGAGGCGGCGAAGAGCGTGGATGAGGAACTAGTGGAGCGCGTTCAGAGTATTTTGAGCGCGATCGTCACGAACGGCCAGACTTGTATAGACGGATTGGTGGAATCGAGGAGTAGTTTGGGGAATGCGCTAACGGCGCCGATGTCGAGCGCCGGGCAACTGTACAGTGTGTCGTTGGGATTGGTTACGAACTCGTTGTCGCGACTGTGGAAGAAGCGGCGGATGAAGGGAGACGGAGGGGATTCCGCGGCGGGCGCGCGGAACAGAGAGCCTCTGAACACGCTGATCAAGGGACTACATAAAATGGGTTCATGCAACCAATCCACGGGCTGCTCAGGAAGGAAGCGTTTGTTGGCTGATTTAGGCACCACAGGAATCTTCATCAACGATACTGTGGTTGTTAGCTCTACTGGTGCAGACAACTTCACCTCAATTGGAGATGCTATTGCCTTTGCTCCCAACAATTCAATGCCTCAAGATGGCTACTTTGTTATCTATGTTAGAGGAGGATACTATGAAGAATACGTCGTCGTCCCCAAATACAAAACCAACATAATGCTCGTTGGTGATGGCATTAACCGAACCGTCATCACTGGGAACCATAGCGTTGTCGATGGTTGGACGACGTATAATTCCTCTACATTTAGAGCTAACACAAGCTTGAGGGTGGATTGGCCTGGCTATAGCTTGATGAATATTACTCAAGCTATGAACTTTACTGTCTATAATCTTACTATGGGAGATACATGGCTGCCTTACACTGATATTCCCTTCTCTGGTGGTTTGGTC 1143 50.83 MNSVLIFLLLLSLRRAGAFDSPPPPPPPSADLCKSTLYPKLCRSILSSIRFSPSDPYGYGKFSVKNCLKQAIKMSSVIGDYLDRGSDSRLNQREAGALEDCRDLSDSNVEFLRSIESVLEAAKSVDEELVERVQSILSAIVTNGQTCIDGLVESRSSLGNALTAPMSSAGQLYSVSLGLVTNSLSRLWKKRRMKGDGGDSAAGARNREPLNTLIKGLHKMGSCNQSTGCSGRKRLLADLGTTGIFINDTVVVSSTGADNFTSIGDAIAFAPNNSMPQDGYFVIYVRGGYYEEYVVVPKYKTNIMLVGDGINRTVITGNHSVVDGWTTYNSSTFRANTSLRVDWPGYSLMNITQAMNFTVYNLTMGDTWLPYTDIPFSGGLV 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2104944 2109803 + Cp4.1LG09g03490.1 Cpe09g00348 474714

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00348 381 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 182 IPR035513 -
Cpe09g00348 381 SUPERFAMILY Pectin lyase-like 246 337 IPR011050 -
Cpe09g00348 381 TIGRFAM PME_inhib: pectinesterase inhibitor domain 29 180 IPR006501 GO:0004857
Cpe09g00348 381 PANTHER PECTINESTERASE 12 333 - -
Cpe09g00348 381 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 47-RELATED 335 380 - -
Cpe09g00348 381 Pfam Plant invertase/pectin methylesterase inhibitor 31 178 IPR006501 GO:0004857
Cpe09g00348 381 Gene3D - 244 338 IPR012334 -
Cpe09g00348 381 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 47-RELATED 12 333 - -
Cpe09g00348 381 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 183 IPR035513 -
Cpe09g00348 381 SMART PMEI_2 24 179 IPR006501 GO:0004857
Cpe09g00348 381 PANTHER PECTINESTERASE 335 380 - -
Cpe09g00348 381 Pfam Pectinesterase 250 336 IPR000070 GO:0030599|GO:0042545
Cpe09g00348 381 CDD PMEI-like_3 32 182 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00348 K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11] - csv:101206112 511.146
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01301 Cpe09g00348 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00348 Cpe-Chr9:2104944 Cpe12g00918 Cpe-Chr12:7922749 8.00E-31 dispersed
Cpe17g00772 Cpe-Chr17:6075349 Cpe09g00348 Cpe-Chr9:2104944 8.41E-20 dispersed
Cpe02g00345 Cpe-Chr2:1861733 Cpe09g00348 Cpe-Chr9:2104944 8.71E-52 transposed
Cpe01g01301 Cpe-Chr1:7823500 Cpe09g00348 Cpe-Chr9:2104944 1.09E-131 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g851 . . . . . . . . . Cmo04g01529 Cma04g01458 Cma18g00970 Car04g01516 Car18g00888 . . Cpe09g00348 . . . . . . . Cla05g02243 Cam05g2409 Cec05g2426 Cco05g2471 Clacu05g2398 Cmu05g2264 Cre05g2382 . . . . . . Chy10g01212 Cme10g00186 . . . . . . . . . . . . . . . Cpe01g01301 . . . . . . . . . . . . . . . Lsi04g00186 Csa05g02685 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe10g01210 . 6 284 Carbohydrate Esterase AT2G41530 81.0 7.5e-137 483.8
Cpe05g00601 CST 285 620 Carbohydrate Esterase AT4G33220 55.7 5.7e-106 381.7
Cpe08g00474 . 170 485 Carbohydrate Esterase AT4G33220 50.3 1.1e-90 330.9
Cpe08g01273 . 229 377 Carbohydrate Esterase AT4G33220 51.7 5.8e-42 169.1
Cpe13g00358 . 185 307 Carbohydrate Esterase AT4G33220 56.9 3.9e-38 156.4
Cpe12g00550 . 59 354 Carbohydrate Esterase AT1G53830 67.2 2.2e-106 383.6
Cpe03g01033 . 10 303 Carbohydrate Esterase AT1G53830 58.6 3.4e-91 333.2
Cpe08g00474 . 57 485 Carbohydrate Esterase AT2G45220 50.2 2.4e-101 366.7
Cpe08g00473 . 7 285 Carbohydrate Esterase AT2G45220 56.7 2.8e-86 316.6
Cpe03g01668 . 20 284 Carbohydrate Esterase AT2G45220 56.3 1.2e-81 301.2
Cpe05g00731 . 7 279 Carbohydrate Esterase AT2G45220 50.4 6.6e-67 252.3
Cpe16g00079 . 73 572 Carbohydrate Esterase AT5G09760 67.9 9.3e-203 703.7
Cpe13g00358 . 189 297 Carbohydrate Esterase AT3G05620 66.1 4.0e-38 156.8
Cpe13g00358 . 186 297 Carbohydrate Esterase AT3G05610 62.5 2.7e-36 151.0
Cpe17g00772 . 27 241 Carbohydrate Esterase AT1G02810 51.7 3.7e-58 223.4
Cpe13g00358 . 185 297 Carbohydrate Esterase AT1G02810 65.5 1.1e-38 158.7
Cpe14g00042 CST 46 600 Carbohydrate Esterase AT3G49220 70.8 1.5e-222 769.6
Cpe05g00601 CST 96 621 Carbohydrate Esterase AT3G49220 63.4 1.2e-190 663.7
Cpe05g00601 CST 196 620 Carbohydrate Esterase AT3G43270 52.5 1.4e-120 430.6
Cpe08g01273 . 126 377 Carbohydrate Esterase AT3G43270 57.0 2.4e-80 297.0
Cpe13g00358 . 185 297 Carbohydrate Esterase AT3G43270 62.8 6.0e-39 159.5
Cpe14g00178 . 8 354 Carbohydrate Esterase AT5G61570 55.2 1.6e-104 376.7
Cpe01g00311 . 39 333 Carbohydrate Esterase AT5G61570 56.3 3.4e-94 342.4
Cpe13g00094 . 34 321 Carbohydrate Esterase AT5G61570 50.5 5.8e-78 288.5
Cpe14g00042 CST 1 599 Carbohydrate Esterase AT5G53370 63.5 2.6e-219 758.8
Cpe05g00601 CST 96 621 Carbohydrate Esterase AT5G53370 66.3 1.9e-201 699.5
Cpe13g00358 . 184 304 Carbohydrate Esterase AT5G49180 58.7 2.3e-36 151.0
Cpe06g00806 . 40 293 Carbohydrate Esterase AT5G55590 55.4 3.7e-87 318.9
Cpe12g00550 . 59 354 Carbohydrate Esterase AT3G14310 67.4 1.4e-108 391.0
Cpe03g01033 . 19 303 Carbohydrate Esterase AT3G14310 60.1 2.6e-91 333.6
Cpe05g00247 . 1 376 Carbohydrate Esterase AT5G47500 60.9 3.7e-133 471.9
Cpe13g00234 . 31 273 Carbohydrate Esterase AT5G47500 56.4 1.8e-98 356.7
Cpe18g00395 CST 97 382 Carbohydrate Esterase AT5G47500 51.6 3.8e-85 312.4
Cpe16g00079 . 73 568 Carbohydrate Esterase AT5G64640 64.1 3.0e-188 655.6
Cpe17g00772 . 24 224 Carbohydrate Esterase AT4G02330 52.8 9.6e-51 198.7
Cpe13g00358 . 185 297 Carbohydrate Esterase AT4G02330 63.7 3.2e-38 157.1
Cpe16g00064 . 29 367 Carbohydrate Esterase AT1G69940 55.8 6.4e-109 391.3
Cpe16g00838 . 9 346 Carbohydrate Esterase AT1G69940 54.0 9.6e-105 377.5
Cpe16g00839 . 79 414 Carbohydrate Esterase AT1G69940 55.2 9.6e-105 377.5
Cpe16g00840 . 809 1122 Carbohydrate Esterase AT1G69940 55.2 2.9e-101 365.9
Cpe16g00836 . 643 940 Carbohydrate Esterase AT1G69940 55.2 1.3e-96 350.5
Cpe11g00870 . 11 266 Carbohydrate Esterase AT2G19150 50.8 1.6e-67 253.4
Cpe05g00601 CST 200 620 Carbohydrate Esterase AT1G11580 51.1 1.1e-113 407.9
Cpe05g00601 CST 200 620 Carbohydrate Esterase AT1G11580 51.1 1.1e-113 407.9
Cpe05g00601 CST 297 550 Carbohydrate Esterase AT1G11370 51.6 1.4e-69 260.4
Cpe16g00064 . 1 367 Carbohydrate Esterase AT5G07410 53.3 1.9e-108 389.8
Cpe16g00838 . 9 346 Carbohydrate Esterase AT5G07410 54.0 2.5e-105 379.4
Cpe16g00839 . 79 414 Carbohydrate Esterase AT5G07410 55.2 3.3e-105 379.0
Cpe16g00840 . 809 1122 Carbohydrate Esterase AT5G07410 54.9 3.8e-101 365.5
Cpe16g00836 . 643 940 Carbohydrate Esterase AT5G07410 54.8 1.6e-96 350.1
Cpe16g00840 . 809 1121 Carbohydrate Esterase AT5G07430 50.5 6.0e-91 331.6
Cpe16g00836 . 643 939 Carbohydrate Esterase AT5G07430 50.5 1.6e-88 323.6
Cpe08g00474 . 9 485 Carbohydrate Esterase AT3G60730 53.9 1.2e-145 513.8
Cpe13g00358 . 190 297 Carbohydrate Esterase AT3G60730 69.4 5.7e-42 169.5
Cpe09g00348 CCT 33 333 Carbohydrate Esterase AT3G10720 51.0 2.5e-81 300.4
Cpe13g00358 . 189 297 Carbohydrate Esterase AT3G10720 70.6 8.8e-42 169.1
Cpe13g00358 . 173 297 Carbohydrate Esterase AT2G26450 55.8 4.2e-36 150.2
Cpe14g00419 . 61 365 Carbohydrate Esterase AT1G05310 69.3 3.1e-133 472.2
Cpe03g00212 . 102 370 Carbohydrate Esterase AT1G05310 53.0 2.0e-87 320.1
Cpe02g01423 CCT 61 301 Carbohydrate Esterase AT5G15860 69.3 9.4e-90 327.4
Cpe01g01376 . 110 326 Carbohydrate Esterase AT5G15860 70.5 3.1e-85 312.4
Cpe03g00692 CCT 22 225 Carbohydrate Esterase AT5G15860 59.1 3.7e-70 262.3
Cpe17g00586 . 2 128 Carbohydrate Esterase AT5G15860 57.1 1.5e-42 170.6
Cpe02g01423 CCT 94 397 Carbohydrate Esterase AT3G02410 72.0 9.8e-127 450.7
Cpe01g01376 . 110 426 Carbohydrate Esterase AT3G02410 67.5 1.6e-121 433.3
Cpe03g00692 CCT 46 324 Carbohydrate Esterase AT3G02410 62.0 9.5e-106 380.9
Cpe17g00586 . 1 268 Carbohydrate Esterase AT3G02410 51.7 1.0e-75 281.2
Cpe03g00608 . 1 472 Carbohydrate Esterase AT5G14310 71.0 1.3e-183 639.8
Cpe04g00509 . 1 472 Carbohydrate Esterase AT5G14310 70.5 1.3e-183 639.8
Cpe02g01382 . 25 347 Carbohydrate Esterase AT5G16080 54.0 2.6e-91 332.8
Cpe09g00285 . 21 344 Carbohydrate Esterase AT5G16080 50.5 2.9e-87 319.3
Cpe09g00285 . 17 344 Carbohydrate Esterase AT1G68620 52.7 1.8e-97 353.2
Cpe01g01357 . 21 348 Carbohydrate Esterase AT1G68620 50.9 8.6e-92 334.3
Cpe01g01376 . 1 479 Carbohydrate Esterase AT1G26120 59.3 3.4e-150 528.9
Cpe02g01423 CCT 94 450 Carbohydrate Esterase AT1G26120 67.5 2.9e-141 499.2
Cpe03g00692 CCT 46 377 Carbohydrate Esterase AT1G26120 58.7 4.0e-119 425.6
Cpe17g00586 . 1 300 Carbohydrate Esterase AT1G26120 54.9 1.0e-93 341.3
Cpe03g00608 . 1 472 Carbohydrate Esterase AT3G27320 70.6 5.9e-186 647.5
Cpe04g00509 . 1 472 Carbohydrate Esterase AT3G27320 69.8 1.4e-182 636.3
Cpe18g00057 . 2 346 Carbohydrate Esterase AT3G05120 77.2 2.8e-162 568.5
Cpe04g00136 . 2 346 Carbohydrate Esterase AT3G05120 75.7 5.8e-160 560.8
Cpe12g00986 CCT 1 341 Carbohydrate Esterase AT3G05120 73.2 1.2e-149 526.6
Cpe17g00827 CCT 1 341 Carbohydrate Esterase AT3G05120 71.1 7.4e-147 517.3
Cpe12g00995 . 2 330 Carbohydrate Esterase AT3G05120 73.1 4.1e-145 511.5
Cpe12g00986 CCT 1 341 Carbohydrate Esterase AT3G63010 74.6 3.9e-159 558.1
Cpe17g00827 CCT 1 341 Carbohydrate Esterase AT3G63010 74.9 2.5e-158 555.4
Cpe12g00995 . 2 330 Carbohydrate Esterase AT3G63010 73.9 1.6e-152 536.2
Cpe18g00057 . 2 344 Carbohydrate Esterase AT3G63010 71.2 4.8e-149 524.6
Cpe04g00136 . 2 344 Carbohydrate Esterase AT3G63010 70.6 1.7e-146 516.2
Cpe06g00145 CCT 691 1418 Carbohydrate Esterase AT5G36210 68.8 1.9e-301 1031.9
Cpe02g00162 CCT 441 1159 Carbohydrate Esterase AT5G36210 68.6 7.4e-298 1020.0
Cpe01g00937 . 42 268 Carbohydrate Esterase AT1G24793 63.4 4.9e-79 291.6
Cpe01g00937 . 42 326 Carbohydrate Esterase AT1G25054 64.6 7.8e-106 380.9
Cpe04g00204 . 47 412 Carbohydrate Esterase AT2G46930 68.0 1.1e-160 563.5
Cpe14g00105 CCT 29 396 Carbohydrate Esterase AT2G46930 53.5 8.7e-118 421.0
Cpe09g00086 CCT 31 398 Carbohydrate Esterase AT2G46930 52.7 1.8e-115 413.3
Cpe01g00534 CCT 27 263 Carbohydrate Esterase AT4G19410 58.2 1.2e-92 337.8
Cpe14g00433 . 1 146 Carbohydrate Esterase AT4G19410 63.9 3.0e-51 200.3
Cpe04g00204 . 47 411 Carbohydrate Esterase AT4G19420 51.7 1.0e-121 434.1
Cpe01g00534 CCT 9 256 Carbohydrate Esterase AT4G19420 58.8 8.8e-97 351.3
Cpe04g00204 . 1 294 Carbohydrate Esterase AT3G05910 68.5 1.8e-120 429.5
Cpe19g00352 . 59 316 Carbohydrate Esterase AT3G05910 51.2 7.8e-79 291.2
Cpe09g00086 CCT 31 292 Carbohydrate Esterase AT3G05910 50.8 3.4e-74 275.8
Cpe01g00534 CCT 26 250 Carbohydrate Esterase AT3G05910 51.0 2.7e-71 266.2
Cpe04g00204 . 25 390 Carbohydrate Esterase AT1G09550 58.7 4.6e-129 458.4
Cpe04g00204 . 115 412 Carbohydrate Esterase AT5G26670 76.8 1.7e-144 509.2
Cpe19g00352 . 129 428 Carbohydrate Esterase AT5G26670 52.8 3.2e-98 355.5
Cpe09g00086 CCT 99 398 Carbohydrate Esterase AT5G26670 52.7 7.7e-92 334.3
Cpe14g00105 CCT 97 396 Carbohydrate Esterase AT5G26670 51.7 5.0e-91 331.6
Cpe01g00534 CCT 88 278 Carbohydrate Esterase AT5G26670 50.3 1.2e-52 204.1
Cpe04g00204 . 1 294 Carbohydrate Esterase AT3G05910 68.5 1.8e-120 429.5
Cpe19g00352 . 59 316 Carbohydrate Esterase AT3G05910 51.2 7.8e-79 291.2
Cpe09g00086 CCT 31 292 Carbohydrate Esterase AT3G05910 50.8 3.4e-74 275.8
Cpe01g00534 CCT 26 250 Carbohydrate Esterase AT3G05910 51.0 2.7e-71 266.2
Cpe19g00352 . 1 394 Carbohydrate Esterase AT3G09410 59.2 1.5e-143 506.5
Cpe01g00534 CCT 27 263 Carbohydrate Esterase AT5G45280 58.6 1.5e-92 337.0
Cpe14g00105 CCT 31 397 Carbohydrate Esterase AT5G23870 68.4 6.6e-158 554.3
Cpe09g00086 CCT 32 399 Carbohydrate Esterase AT5G23870 67.6 1.2e-156 550.1
Cpe19g00352 . 63 423 Carbohydrate Esterase AT5G23870 54.6 7.1e-120 427.9
Cpe04g00204 . 49 410 Carbohydrate Esterase AT5G23870 51.9 7.3e-117 417.9
Cpe04g00204 . 48 411 Carbohydrate Esterase AT3G62060 71.5 1.4e-166 583.2
Cpe19g00352 . 62 428 Carbohydrate Esterase AT3G62060 50.3 1.3e-119 427.2
Cpe14g00105 CCT 30 396 Carbohydrate Esterase AT3G62060 52.7 5.6e-118 421.8
Cpe09g00086 CCT 33 398 Carbohydrate Esterase AT3G62060 52.0 1.4e-116 417.2
Cpe04g00204 . 48 412 Carbohydrate Esterase AT1G57590 72.9 5.7e-168 587.8
Cpe19g00352 . 62 428 Carbohydrate Esterase AT1G57590 52.0 1.4e-121 433.7
Cpe14g00105 CCT 30 396 Carbohydrate Esterase AT1G57590 52.6 1.2e-117 420.6
Cpe09g00086 CCT 33 398 Carbohydrate Esterase AT1G57590 53.3 6.0e-117 418.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012561 0 1 0 0 0 1 3 1 1 1 1 1 2 1 1 2 1 0 2 1 1 0 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00348 Cpe_Chr09 FPKM 18.076262 17.405195 13.901672 15.648348 16.809753 14.844138 16.062908 13.466298 15.539913 16.118118