Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00366 ATGGCCATAAGCCGATGTGTCGTTTTTAATCATTCACTTCTTCACTATCATCGTCGTCCTCCTTCACTTTTCTCATCTGCTCTGCGTTCGACCTCGTCATCCATGGAAGCTCCTCCCGAAGGTTACCGCAGAAACGTTGGCATTTGCCTCATCAATTCTTCTAAGAAGATTTTTGCTGCCTCAAGGTTGGATATACCAGATGCTTGGCAAATGCCACAGGGCGGCGTGGATGAGGGTGAAGATCCAAGAAGTGCAGCCATCAGAGAACTTAGAGAAGAAACAGGAGTCAGATCCGCAGAGATTATTGCTGAAGTACCTTATTGGCTGACTTATGACTTCCCACCACATGTCCGGGAAAAACTTCGACATCAGTGGGGTTCTGACTGGAAGGGTCAAGCGCAGAAGTGA 408 47.79 MAISRCVVFNHSLLHYHRRPPSLFSSALRSTSSSMEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREETGVRSAEIIAEVPYWLTYDFPPHVREKLRHQWGSDWKGQAQK 135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2197184 2202556 - Cp4.1LG09g03770.1 Cpe09g00366 474732

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00366 135 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 31 135 - -
Cpe09g00366 135 ProSiteProfiles Nudix hydrolase domain profile. 41 135 IPR000086 -
Cpe09g00366 135 ProSitePatterns Nudix box signature. 74 95 IPR020084 GO:0016787
Cpe09g00366 135 PANTHER NUDIX HYDROLASE 26, CHLOROPLASTIC 13 135 - -
Cpe09g00366 135 PRINTS NUDIX hydrolase family signature 83 98 IPR020476 -
Cpe09g00366 135 PRINTS NUDIX hydrolase family signature 69 83 IPR020476 -
Cpe09g00366 135 Pfam NUDIX domain 42 131 IPR000086 -
Cpe09g00366 135 CDD Ap4A_hydrolase_plant_like 41 135 IPR022927 -
Cpe09g00366 135 PANTHER UDP/ADP-SUGAR PYROPHOSPHATASE 13 135 - -
Cpe09g00366 135 SUPERFAMILY Nudix 38 133 IPR015797 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00366 - - - bhj:120081185 245.358
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00366 Cpe-Chr9:2197184 Cpe15g00682 Cpe-Chr15:7416755 2.56E-08 dispersed
Cpe01g00905 Cpe-Chr1:5329568 Cpe09g00366 Cpe-Chr9:2197184 4.09E-46 transposed
Cpe03g00305 Cpe-Chr3:1567590 Cpe09g00366 Cpe-Chr9:2197184 7.08E-47 transposed
Cpe08g00970 Cpe-Chr8:7612256 Cpe09g00366 Cpe-Chr9:2197184 4.17E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g428 . . . . Bpe13g01031 . . . . Cmo18g00957 . Cma18g00956 . Car18g00873 . Cpe09g00366 . . . . . . . . Cla07g00640 Cam07g0663 Cec07g0715 Cco07g0718 Clacu07g0661 Cmu07g0684 Cre07g1032 . . Cone6ag0396 Cone9ag0422 Lsi04g01163 Csa05g02704 Chy10g01230 Cme10g01537 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000763 3 3 1 2 1 3 4 3 3 3 3 3 4 3 3 3 3 4 3 3 3 2 5 3 4 3 3 5 5 2 93
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00366 Cpe_Chr09 FPKM 10.209549 11.2161 17.11585 16.866211 23.534369 21.825918 24.446857 21.691313 19.861692 18.845184