Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00390 ATGTTGGCAATGGAGAAGGATTTTGATGCTAAGTTGATGATTCAGAATCAGGGGAACGCTTCTAATGGCGGCGGCAATGTTCAGAGATCCAATAGCTTTGCGTTTCGTGCTCCTCAGGAGAATTTTACTATACAGGATTTTGAATTGGGGAAGATTTATGGCGTTGGTTCATATTCCAAGGTTGTGAGGGCGAAGAAGAAGGACACAGGAATTGTGTATGCATTGAAGATAATGGACAAGAAATTCATTACAAAGGAAAATAAAACTGCTTATGTGAAGTTGGAAAGGATTGTACTTGATCAATTGGACCATCCTGGTGTTGTCAGGCTATTTTTTACCTTTCAGGATACTTTTTCTTTGTACATGGCATTGGAGTCGTGTGAAGGTGGAGAGCTTTTTGATCAGATAAATAGGAAAGGTCGTCTATCGGAGGAGGAAGCTCGATTTTACGCCGCAGAAGTCATCGACGCTCTTGAATACATACACAACATGGGATTGATACACCGAGATATCAAGCCTGAGAACTTGCTGCTTACTACTGACGGACATATCAAAATAGCTGATTTCGGTAGCGTAAAGCCTATGGTCGACAGTCGAATTACCGTGCTTCCGAATGCAGCATCGGATGACAAAGCTTGTACATTTGTGGGCACTGCTGCATATGTTCCTCCAGAAGTTCTTAATTCCTCCCCTGCAACTTTCGGAAACGACCTTTGGGCGCTCGGGTGCACCGTGTACCAAATGCTTTCAGGGACTTCTCCTTTTAAGGATGCAAGTGAGTGGCTTATTTTTCAAAAAATTGTAGCTCGAGATATAAAATTCCCCAGTTATTTTTCCGAGCAAGCCCGGGATCTCATCGACCACCTATTGGATTTAGATCCCGTTAAGAGACCGGGTGCCGGAGCTGAGGGCTATGCTTCTCTTAAGAGTCATCCCTTCTTTGAGGGGGTTGATTGGAAGAACATAAGAACACAAACTCCTCCCAAACTTGCTTTAGAAGCAGTGTCTCGCTCGAACGAGAACGACGACAGCTCCGAGTCCTCTTGGAATCCTTCGCATATCGGAGACGGTGCACCGAGACAAAACGACGGGAATGCTGGTTCTGCATCGACTTCCGAAGGATCGAATCATATTGCTCGGATTGCATCGATAGACTCCTTCGATTCGAAATGGCAACAATTTCTTGAACCTGGAGAATCTGTTCTTATGATATCAATGGTGAAAAAGATTCAGAAAATCACAAGCAAAAAGGTTCAGCTTATCCTCACAAACAAACCAAAGTTGATTTATGTTGATCCTTCAAAGCTCATTGTTAAGGGGAATATCATTTGGTCTGACAATCCTAATGACCTCAACATTCAAGTGATTAGCCCTTCACATTTCAAGATTTGTACGTTAGAAGAAATGATGAGCTAA 1416 43.08 MLAMEKDFDAKLMIQNQGNASNGGGNVQRSNSFAFRAPQENFTIQDFELGKIYGVGSYSKVVRAKKKDTGIVYALKIMDKKFITKENKTAYVKLERIVLDQLDHPGVVRLFFTFQDTFSLYMALESCEGGELFDQINRKGRLSEEEARFYAAEVIDALEYIHNMGLIHRDIKPENLLLTTDGHIKIADFGSVKPMVDSRITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTVYQMLSGTSPFKDASEWLIFQKIVARDIKFPSYFSEQARDLIDHLLDLDPVKRPGAGAEGYASLKSHPFFEGVDWKNIRTQTPPKLALEAVSRSNENDDSSESSWNPSHIGDGAPRQNDGNAGSASTSEGSNHIARIASIDSFDSKWQQFLEPGESVLMISMVKKIQKITSKKVQLILTNKPKLIYVDPSKLIVKGNIIWSDNPNDLNIQVISPSHFKICTLEEMMS 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2390952 2397614 - Cp4.1LG09g03950.1 Cpe09g00390 474756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00390 471 SMART serkin_6 47 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe09g00390 471 SUPERFAMILY Protein kinase-like (PK-like) 44 356 IPR011009 -
Cpe09g00390 471 Pfam Protein kinase domain 49 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe09g00390 471 Gene3D Transferase(Phosphotransferase) domain 1 131 326 - -
Cpe09g00390 471 Gene3D - 361 470 IPR011993 -
Cpe09g00390 471 PANTHER 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1 21 449 - -
Cpe09g00390 471 PANTHER SERINE/THREONINE-PROTEIN KINASE 21 449 - -
Cpe09g00390 471 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Cpe09g00390 471 Gene3D Phosphorylase Kinase; domain 1 45 130 - -
Cpe09g00390 471 ProSiteProfiles Protein kinase domain profile. 47 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe09g00390 471 SUPERFAMILY PH domain-like 308 465 - -
Cpe09g00390 471 MobiDBLite consensus disorder prediction 337 355 - -
Cpe09g00390 471 CDD STKc_PDK1 45 314 IPR039046 GO:0004674
Cpe09g00390 471 Pfam PH domain 389 465 IPR033931 -
Cpe09g00390 471 MobiDBLite consensus disorder prediction 333 374 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g01267 Cpe09g00390 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00390 Cpe-Chr9:2390952 Cpe04g01529 Cpe-Chr4:12024924 7.12E-62 dispersed
Cpe01g01267 Cpe-Chr1:7606062 Cpe09g00390 Cpe-Chr9:2390952 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62598 PF00069 Pkinase 2.80E-65 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00390 K06276 - csv:101212874 855.899