Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe09g00390 | ATGTTGGCAATGGAGAAGGATTTTGATGCTAAGTTGATGATTCAGAATCAGGGGAACGCTTCTAATGGCGGCGGCAATGTTCAGAGATCCAATAGCTTTGCGTTTCGTGCTCCTCAGGAGAATTTTACTATACAGGATTTTGAATTGGGGAAGATTTATGGCGTTGGTTCATATTCCAAGGTTGTGAGGGCGAAGAAGAAGGACACAGGAATTGTGTATGCATTGAAGATAATGGACAAGAAATTCATTACAAAGGAAAATAAAACTGCTTATGTGAAGTTGGAAAGGATTGTACTTGATCAATTGGACCATCCTGGTGTTGTCAGGCTATTTTTTACCTTTCAGGATACTTTTTCTTTGTACATGGCATTGGAGTCGTGTGAAGGTGGAGAGCTTTTTGATCAGATAAATAGGAAAGGTCGTCTATCGGAGGAGGAAGCTCGATTTTACGCCGCAGAAGTCATCGACGCTCTTGAATACATACACAACATGGGATTGATACACCGAGATATCAAGCCTGAGAACTTGCTGCTTACTACTGACGGACATATCAAAATAGCTGATTTCGGTAGCGTAAAGCCTATGGTCGACAGTCGAATTACCGTGCTTCCGAATGCAGCATCGGATGACAAAGCTTGTACATTTGTGGGCACTGCTGCATATGTTCCTCCAGAAGTTCTTAATTCCTCCCCTGCAACTTTCGGAAACGACCTTTGGGCGCTCGGGTGCACCGTGTACCAAATGCTTTCAGGGACTTCTCCTTTTAAGGATGCAAGTGAGTGGCTTATTTTTCAAAAAATTGTAGCTCGAGATATAAAATTCCCCAGTTATTTTTCCGAGCAAGCCCGGGATCTCATCGACCACCTATTGGATTTAGATCCCGTTAAGAGACCGGGTGCCGGAGCTGAGGGCTATGCTTCTCTTAAGAGTCATCCCTTCTTTGAGGGGGTTGATTGGAAGAACATAAGAACACAAACTCCTCCCAAACTTGCTTTAGAAGCAGTGTCTCGCTCGAACGAGAACGACGACAGCTCCGAGTCCTCTTGGAATCCTTCGCATATCGGAGACGGTGCACCGAGACAAAACGACGGGAATGCTGGTTCTGCATCGACTTCCGAAGGATCGAATCATATTGCTCGGATTGCATCGATAGACTCCTTCGATTCGAAATGGCAACAATTTCTTGAACCTGGAGAATCTGTTCTTATGATATCAATGGTGAAAAAGATTCAGAAAATCACAAGCAAAAAGGTTCAGCTTATCCTCACAAACAAACCAAAGTTGATTTATGTTGATCCTTCAAAGCTCATTGTTAAGGGGAATATCATTTGGTCTGACAATCCTAATGACCTCAACATTCAAGTGATTAGCCCTTCACATTTCAAGATTTGTACGTTAGAAGAAATGATGAGCTAA | 1416 | 43.08 | MLAMEKDFDAKLMIQNQGNASNGGGNVQRSNSFAFRAPQENFTIQDFELGKIYGVGSYSKVVRAKKKDTGIVYALKIMDKKFITKENKTAYVKLERIVLDQLDHPGVVRLFFTFQDTFSLYMALESCEGGELFDQINRKGRLSEEEARFYAAEVIDALEYIHNMGLIHRDIKPENLLLTTDGHIKIADFGSVKPMVDSRITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTVYQMLSGTSPFKDASEWLIFQKIVARDIKFPSYFSEQARDLIDHLLDLDPVKRPGAGAEGYASLKSHPFFEGVDWKNIRTQTPPKLALEAVSRSNENDDSSESSWNPSHIGDGAPRQNDGNAGSASTSEGSNHIARIASIDSFDSKWQQFLEPGESVLMISMVKKIQKITSKKVQLILTNKPKLIYVDPSKLIVKGNIIWSDNPNDLNIQVISPSHFKICTLEEMMS | 471 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 2390952 | 2397614 | - | Cp4.1LG09g03950.1 | Cpe09g00390 | 474756 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe09g00390 | 471 | SMART | serkin_6 | 47 | 314 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cpe09g00390 | 471 | SUPERFAMILY | Protein kinase-like (PK-like) | 44 | 356 | IPR011009 | - | |
Cpe09g00390 | 471 | Pfam | Protein kinase domain | 49 | 314 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cpe09g00390 | 471 | Gene3D | Transferase(Phosphotransferase) domain 1 | 131 | 326 | - | - | |
Cpe09g00390 | 471 | Gene3D | - | 361 | 470 | IPR011993 | - | |
Cpe09g00390 | 471 | PANTHER | 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1 | 21 | 449 | - | - | |
Cpe09g00390 | 471 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 21 | 449 | - | - | |
Cpe09g00390 | 471 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 166 | 178 | IPR008271 | GO:0004672|GO:0006468 | |
Cpe09g00390 | 471 | Gene3D | Phosphorylase Kinase; domain 1 | 45 | 130 | - | - | |
Cpe09g00390 | 471 | ProSiteProfiles | Protein kinase domain profile. | 47 | 314 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cpe09g00390 | 471 | SUPERFAMILY | PH domain-like | 308 | 465 | - | - | |
Cpe09g00390 | 471 | MobiDBLite | consensus disorder prediction | 337 | 355 | - | - | |
Cpe09g00390 | 471 | CDD | STKc_PDK1 | 45 | 314 | IPR039046 | GO:0004674 | |
Cpe09g00390 | 471 | Pfam | PH domain | 389 | 465 | IPR033931 | - | |
Cpe09g00390 | 471 | MobiDBLite | consensus disorder prediction | 333 | 374 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe01g01267 | Cpe09g00390 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe09g00390 | Cpe-Chr9:2390952 | Cpe04g01529 | Cpe-Chr4:12024924 | 7.12E-62 | dispersed | |
Cpe01g01267 | Cpe-Chr1:7606062 | Cpe09g00390 | Cpe-Chr9:2390952 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
62598 | PF00069 | Pkinase | 2.80E-65 | CL0016 | Cpe | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe09g00390 | K06276 | - | csv:101212874 | 855.899 |