Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00392 ATGAATTGTCTTCAAAACCTTTCAATATCATCTTCTTTGCCGCTGCGAAGCTTCAAATGCCGGCAGAGAAAGCTTGAGTTCCAGCCCTGCAAACTGGTGATGAGGAACTTTACCGATCTACATCGACGTTCTTCCGTGAAGGCCGTATCTGGATCTACATCAAGTGTTGAAATAAGTGGCGCTGAAGTGGATGATGCCGAGGCAAAGGAGGAAAAAGAGGCAAAGGAGGAAAAAGAGGAAAAGGAGGAAAAGGAGGAAAAGTCTGAGATATACAGCCAGAACATGACAGAAGCTATGGGTGCTGTATTGACATATAGACATGAGCTGGGAATGAACTACAACTTCATTTGTCCGGATTTAATTGTAGGGTCATGCCTACAGACTCGAGAGGATGTTGACAAGCTCCGCAGCATTGGAGTTAAAACAATTTTCTGCTTGCAGCAAGATCCAGATTTAGAATATTTTGGGGTTGACATTGGTGCTATAATAGAGTATACAAGGACGTTTGATGATATCGAACATTTGCGAGCTCAAATAAGGGATTTTGATGCATTCGACCTACGGCTAAGATTACCAGCTGTCGTAAGCAAATTACATAAAGCGATAAACCAAAACGGTGGAGTGACTTATATACATTGCACTGCTGGACTTGGAAGAGCTCCTGCTGTTGCGCTGGCTTATATGTTCTGGGTTCGAGGCTACACGCTCAATGAGGCTTTAGAATTACTGCTGAGCAAACGACCATGCTTCCCAAAAATAGATGCTATTAAAAGTTCAACGGCTGATATTCTTTCGGGATTTAAAAAGAAGCCCATCACTTTATCGTGGGAAGATGACCAATGCTCAATTGTAGAGGTATCTGGACTTGATATTGGATGGGGTCAGAGGGTTCTATTAAAATTCGACAAGGAACGAGGTGTATGGATTCTCAACAAGGAACTGGCGGAAGGACTATATGAATACAAATATATCATTGATGGTCAATGGAGGTGCAACGAAACCGAGCCCGTCACTCCACCCAACAAAGATGGCCACGTCAACAATTTCATTCAAGTTGATGGTGATGATGATCCAAGTAGTGAGAGAGCTATTGTCCGAGGAAGGTTAACTGGAGACGACCCAGAACTCACGAATGAAGAAAGAGGCAAAATAAGGCAATTTCTTGAAGCTTGCCCGAATGAAAATTGA 1188 42.93 MNCLQNLSISSSLPLRSFKCRQRKLEFQPCKLVMRNFTDLHRRSSVKAVSGSTSSVEISGAEVDDAEAKEEKEAKEEKEEKEEKEEKSEIYSQNMTEAMGAVLTYRHELGMNYNFICPDLIVGSCLQTREDVDKLRSIGVKTIFCLQQDPDLEYFGVDIGAIIEYTRTFDDIEHLRAQIRDFDAFDLRLRLPAVVSKLHKAINQNGGVTYIHCTAGLGRAPAVALAYMFWVRGYTLNEALELLLSKRPCFPKIDAIKSSTADILSGFKKKPITLSWEDDQCSIVEVSGLDIGWGQRVLLKFDKERGVWILNKELAEGLYEYKYIIDGQWRCNETEPVTPPNKDGHVNNFIQVDGDDDPSSERAIVRGRLTGDDPELTNEERGKIRQFLEACPNEN 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2415875 2422977 + Cp4.1LG09g03900.1 Cpe09g00392 474758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00392 395 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 109 253 IPR029021 -
Cpe09g00392 395 MobiDBLite consensus disorder prediction 62 89 - -
Cpe09g00392 395 Pfam Glycogen recognition site of AMP-activated protein kinase 271 355 IPR032640 -
Cpe09g00392 395 PANTHER PHOSPHOGLUCAN PHOSPHATASE DSP4, CHLOROPLASTIC 1 394 IPR030079 GO:0005982|GO:0007623|GO:0019203
Cpe09g00392 395 Coils Coil 58 94 - -
Cpe09g00392 395 MobiDBLite consensus disorder prediction 57 89 - -
Cpe09g00392 395 CDD E_set_AMPKbeta_like_N 271 352 - -
Cpe09g00392 395 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 189 248 IPR000387 GO:0016311|GO:0016791
Cpe09g00392 395 Gene3D Immunoglobulins 267 359 IPR013783 -
Cpe09g00392 395 Pfam Dual specificity phosphatase, catalytic domain 164 250 IPR000340 GO:0008138|GO:0016311
Cpe09g00392 395 SUPERFAMILY E set domains 270 353 IPR014756 -
Cpe09g00392 395 ProSiteProfiles Dual specificity protein phosphatase domain profile. 112 269 IPR020422 GO:0006470|GO:0008138
Cpe09g00392 395 Gene3D Protein tyrosine phosphatase superfamily 105 387 IPR029021 -
Cpe09g00392 395 CDD DSP_laforin-like 111 258 IPR045204 GO:0019203|GO:0046838
Cpe09g00392 395 SMART dsp_5 112 258 IPR020422 GO:0006470|GO:0008138
Cpe09g00392 395 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 1 394 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00550 Cpe-Chr4:5925648 Cpe09g00392 Cpe-Chr9:2415875 4.27E-30 dispersed
Cpe09g00392 Cpe-Chr9:2415875 Cpe11g01148 Cpe-Chr11:9491701 1.13E-06 dispersed
Cpe01g01265 Cpe-Chr1:7587491 Cpe09g00392 Cpe-Chr9:2415875 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00392 - - cpep:111802109 761.525