Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00403 ATGTTTCCTGTTCTTAGCATTCTCTTGATATGGATGTCTGGTTTGTTCTTTCTTGTCGCCTCGGCTTCTTTCAATCTGACATTGCCCCACCAGCATCCTGACCCTGATTCTGTTGCTGATGAACTTCAAAGGACAGTCAATGCATCGATATCGAGAAGAAAAGCGCTATCCATCGAATCAAAGGATCAAGCCTTCTCTTGCCTCACCGGAAACCCCATCGATGATTGCTGGCGTTGCGACCCAAATTGGGCGGCGAACCGGCAGAGACTCGCCGACTGCGGCATCGGATTCGGCCGCGACGCCATGGGTGGCAAAGGCGGCAAGATCTACATCGTCACCGACTCCTCAGATTCCAACCCGGAAAACCCAACTCCGGGAACCCTCCGCCACGCCGTGATCCAATTCGAACCACTCTGGATCATCTTCTCCGCCGACATGACAATCAAACTCAAATATGAACTTATCATCAACAGCTTCAAAACGATCGACGGCCGTGGCGCCAACGTCCACATCACCGGCGGTGGTTGCATCACTATCCAATACGTGTCCAACATCATCATCCACAACATCCACGTGCATCACTGTGTACCCTCTGGCAATGCCAACATAAGCTCAAGAAAAATTTGGATAGACCATTGCTCGCTTTCATACTGCACCGACGGGCTAATAGACGCAATAATGGGATCGACAGGTATAACAATATCGAACAGCTATTTTTCGCACCACGACGAGGTGATGCTGCTGGGACACGACGACCGGTACGTGCAGGACTCGGGTATGCAAGTGACCATAGCGTTCAACCACTTCGGTGAGGCTCTGGTGCAGCGCATGCCCAGGTGCAGACATGGCTACATTCATGTGGTCAACAATGACTTCACGGCTTGGGAAATGTACGCCATTGGCGGCAGTGCTCGCCCCACTATTAACAGCCAGGGTAACCGTTATGTGGCTCCTGTCAACCCCAATGCTAAAGAGGTGACGAGACGTTTAGATGCGGCGGAGACGGAATGGACGGCGTGGAATTGGCGGACGGACGGTGATATTTTGGTGAACGGCGCGTTTTTTGTGCCGTCCGGTGCCGGACTTAGCACCCAGTACGGTAAAGCCTCCAGTACTGAGCCTAAGTATAGTAATGGTGAAGGGATTGTATATCCAGGATTTAGCGGCAGCACTGGCGGCGGTAATGGCGGATATGGCGGCGGCACTGTCATTAATAATAGCCCGATGTATGGAAATAGCGGTGGTGGAGAGGATGACTTTTACGGAATGATATTTAAAGGCGGCGGTAACAGAGTATCGCCGCCGTGGTCGCCGCCGATGATCTTATGTGTTCAAATTTTAGTAGTTTTGTATATAGTAACAAATAATAGTGGTTTATTGACGTTATAG 1389 50.83 MFPVLSILLIWMSGLFFLVASASFNLTLPHQHPDPDSVADELQRTVNASISRRKALSIESKDQAFSCLTGNPIDDCWRCDPNWAANRQRLADCGIGFGRDAMGGKGGKIYIVTDSSDSNPENPTPGTLRHAVIQFEPLWIIFSADMTIKLKYELIINSFKTIDGRGANVHITGGGCITIQYVSNIIIHNIHVHHCVPSGNANISSRKIWIDHCSLSYCTDGLIDAIMGSTGITISNSYFSHHDEVMLLGHDDRYVQDSGMQVTIAFNHFGEALVQRMPRCRHGYIHVVNNDFTAWEMYAIGGSARPTINSQGNRYVAPVNPNAKEVTRRLDAAETEWTAWNWRTDGDILVNGAFFVPSGAGLSTQYGKASSTEPKYSNGEGIVYPGFSGSTGGGNGGYGGGTVINNSPMYGNSGGGEDDFYGMIFKGGGNRVSPPWSPPMILCVQILVVLYIVTNNSGLLTL 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2530200 2535067 + Cp4.1LG09g03980.1 Cpe09g00403 474769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00403 462 SUPERFAMILY Pectin lyase-like 64 377 IPR011050 -
Cpe09g00403 462 PANTHER PECTATE LYASE 18-RELATED 203 376 IPR045032 GO:0030570
Cpe09g00403 462 PANTHER PECTATE LYASE 18-RELATED 10 205 IPR045032 GO:0030570
Cpe09g00403 462 SMART amb_all 145 321 IPR002022 -
Cpe09g00403 462 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Cpe09g00403 462 PRINTS Pollen allergen Amb family signature 276 295 IPR018082 -
Cpe09g00403 462 PRINTS Pollen allergen Amb family signature 298 317 IPR018082 -
Cpe09g00403 462 PRINTS Pollen allergen Amb family signature 340 364 IPR018082 -
Cpe09g00403 462 Gene3D - 70 381 IPR012334 -
Cpe09g00403 462 Pfam Pectate lyase 153 313 IPR002022 -
Cpe09g00403 462 PANTHER PECTATE LYASE 203 376 - -
Cpe09g00403 462 PANTHER PECTATE LYASE 10 205 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe09g00403 Cpe13g00765 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00403 Cpe-Chr9:2530200 Cpe13g00765 Cpe-Chr13:6983856 0 dispersed
Cpe01g02212 Cpe-Chr1:18815530 Cpe09g00403 Cpe-Chr9:2530200 0 wgd
Cpe01g01256 Cpe-Chr1:7517844 Cpe09g00403 Cpe-Chr9:2530200 0 wgd
Cpe10g00244 Cpe-Chr10:1418792 Cpe09g00403 Cpe-Chr9:2530200 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00403 K01728 - csv:101205739 770.77