Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00408 ATGGGTCCATCGGGGAAGGACCTGAAAGACATGGTGGTGAGTCAACTGGGGGAGGCTTTGAGGGAGATATCGGGGCTTCCTGAGTATAACGGCATATGCAAGAAGGTGTATGGGGATTTGATTCGAAGGGTGAAGCTGTTAAGCCCTTTGTTTGAGGAATTGAGAGATGGAGATGAAGAACTTGAATTAGATGTTCTTAAGGGTTTGGAGTTGCTGAAAATTGCTTTGGATTCTGCTGCAGAGCTTCTTAGATCGGTCAGCCGAGGTAGCAAGCTATTTCAGGCTTCGGAATTAGAGAAATTAGTACTTGAGTTTCATCATATGACTGAAGATATTGAAGCAGCACTCAGCAAGCTTCCCATCGACAAGCTCGGGATCTCGGATGAGGTTCGAGAACAGACCGAGCTTGTTCATGCCCAATTCAAACGAGCGAAAGAGAGAGTAGGTTCAGCTGATGCAGAGTTAGGCAAGGACTTAGTCATATTAGAGGAAGAAAAAGATCCTGACCCTGCAATATTGAAAAGAGTTTCTGAAAAACTGCATCTTCGGAGTATAAACGATCTGAAGAAAGAGTCGTTAGCGATCCATGAGCTGGTGATCTCGATCGATGGAGGAGACCCGGGGGATGTTTTTGGTAAACTGTCGTCCATTTTAAAGAAGTTGAAGGACTATGTACAATCAGAAAACCCAGAAGTTGAAACTTCTCAAGATGAAAAAAGTACGACTATTAAACACAGATCTCCTGTCATCCCCGACGATTTCAGGTGCCCCATATCTCTTGAATTAATGAGGGATCCCGTCATCGTCTCGACCGGGCAGACGTACGAGAGATCTTGCATTCAGAAATGGTTGGATGCAGGGCACAAAACCTGTCCAAAAACTCAGCAAGCTTTACAACATACAGCCTTAACACCAAATTACGTCTTGAAGAGCCTGATTTCTTTGTGGTGTGAGAACAATGGCGTTGAATTGCCAAGGAAGCAAGGTAACTGCAGAAGCAAGAAACCTGGAAGCGGTATTTCAGACTGCGATCGGGCTACCATTGACGCCTTACTGCTAAAACTGGTTAATGGATCTCCAGAACAGAAAAGATCAGCTGCTGGTGAGCTCCGACTCCTAGCGAAGAGGAATTCCGATAACAGAATTTGTATCGCCGAGGCGGGAGCCATTCCGTTCCTTGTCGAACTATTATCCTCAAATGATACTAGGACTCAGGAGCATGCAGTTACAGCACTATTGAATCTTTCAATCAACGACAGTAACAAAAGAACGATTGTCGATCTTCGAGCCATTCCTGCTATTGTCGAAGTGCTGAAAAATGGCAGTATGGAAGCAAGGGAAAATGCAGCTGCGACCCTTTTCAGCTTATCCGTGATAGACGAGAACAAGGTCGCCATCGGAGCAGCTGGTGCGATTCCTGCTCTCATAAGCTTGCTTTGTGAAGGTACTCCCAGAGGAAAGAAGGATGCTGCCACTGCTATCTTCAATCTTTCAATCTATCAGGGAAACAAAGCAAGGGCTCTAAGAGCAGGCATTGTGACTCCACTCATGGGATTTCTGAAAGACACTGGAGGTGGCATGGTGGATGAAGCTCTAGCCATTCTGGCCATTCTTGCAACTCACCATGAAGGAAAGGTAGCAATAGGGCAAGCCGAGCCAATGGCGGTTCTGTTAGAGTTCATCAAAACTGGTTCGCCACGGAACCGGGAAAACGCTGCAGCCGTGCTGTGGTCACTTTGCAGTACCGATTTCGAGCAGTTGAAGCTAGCTAGGGAGCATGGTGCTGAAGAGGCACTGAAAGAAGTATCTGAGAATGGCACAGACAGAGCAAAGAGGAAAGCAGGAAGCATTCTAGAGCTCTTTCAACGCTTTGATGGACCATCTTCACCCTTGTAA 1896 46.31 MGPSGKDLKDMVVSQLGEALREISGLPEYNGICKKVYGDLIRRVKLLSPLFEELRDGDEELELDVLKGLELLKIALDSAAELLRSVSRGSKLFQASELEKLVLEFHHMTEDIEAALSKLPIDKLGISDEVREQTELVHAQFKRAKERVGSADAELGKDLVILEEEKDPDPAILKRVSEKLHLRSINDLKKESLAIHELVISIDGGDPGDVFGKLSSILKKLKDYVQSENPEVETSQDEKSTTIKHRSPVIPDDFRCPISLELMRDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQALQHTALTPNYVLKSLISLWCENNGVELPRKQGNCRSKKPGSGISDCDRATIDALLLKLVNGSPEQKRSAAGELRLLAKRNSDNRICIAEAGAIPFLVELLSSNDTRTQEHAVTALLNLSINDSNKRTIVDLRAIPAIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALISLLCEGTPRGKKDAATAIFNLSIYQGNKARALRAGIVTPLMGFLKDTGGGMVDEALAILAILATHHEGKVAIGQAEPMAVLLEFIKTGSPRNRENAAAVLWSLCSTDFEQLKLAREHGAEEALKEVSENGTDRAKRKAGSILELFQRFDGPSSPL 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2564268 2567822 - Cp4.1LG09g04050.1 Cpe09g00408 474774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00408 631 Pfam Armadillo/beta-catenin-like repeat 460 498 IPR000225 GO:0005515
Cpe09g00408 631 Pfam Armadillo/beta-catenin-like repeat 377 416 IPR000225 GO:0005515
Cpe09g00408 631 Pfam Armadillo/beta-catenin-like repeat 418 457 IPR000225 GO:0005515
Cpe09g00408 631 PANTHER U BOX DOMAIN-CONTAINING 12 624 - -
Cpe09g00408 631 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 388 430 IPR000225 GO:0005515
Cpe09g00408 631 CDD RING-Ubox_PUB 254 296 IPR045210 -
Cpe09g00408 631 ProSiteProfiles U-box domain profile. 249 323 IPR003613 GO:0004842|GO:0016567
Cpe09g00408 631 SMART arm_5 541 581 IPR000225 GO:0005515
Cpe09g00408 631 SMART arm_5 500 540 IPR000225 GO:0005515
Cpe09g00408 631 SMART arm_5 459 499 IPR000225 GO:0005515
Cpe09g00408 631 SMART arm_5 418 458 IPR000225 GO:0005515
Cpe09g00408 631 SMART arm_5 377 417 IPR000225 GO:0005515
Cpe09g00408 631 Gene3D - 343 421 IPR011989 -
Cpe09g00408 631 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 323 IPR013083 -
Cpe09g00408 631 Pfam U-box domain 250 320 IPR003613 GO:0004842|GO:0016567
Cpe09g00408 631 Gene3D - 526 627 IPR011989 -
Cpe09g00408 631 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 429 471 IPR000225 GO:0005515
Cpe09g00408 631 SMART Ubox_2 253 316 IPR003613 GO:0004842|GO:0016567
Cpe09g00408 631 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 12 624 - -
Cpe09g00408 631 SUPERFAMILY RING/U-box 247 324 - -
Cpe09g00408 631 Gene3D - 12 122 IPR036537 GO:0007166
Cpe09g00408 631 Gene3D - 422 525 IPR011989 -
Cpe09g00408 631 SUPERFAMILY ARM repeat 347 621 IPR016024 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g01250 Cpe09g00408 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01239 Cpe-Chr2:11139117 Cpe09g00408 Cpe-Chr9:2564268 0 dispersed
Cpe05g00914 Cpe-Chr5:6010481 Cpe09g00408 Cpe-Chr9:2564268 3.97E-18 dispersed
Cpe06g00211 Cpe-Chr6:1124965 Cpe09g00408 Cpe-Chr9:2564268 4.45E-25 dispersed
Cpe09g00408 Cpe-Chr9:2564268 Cpe16g00603 Cpe-Chr16:6674165 0 dispersed
Cpe01g01250 Cpe-Chr1:7485832 Cpe09g00408 Cpe-Chr9:2564268 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00408 - - csv:101221065 1051.58