Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00431 ATGTTTGGATCGGTGGTAAATTCTCAAGTCCTTCCAAATTGTGGCCAGCTCTTATTCGCATCCACTTCAGATATTGACAAAACCCCATCAATTTTGAGAGAAGAATATGAATTTGTAGAGGGAAAATCTAGCCATGGAAAAGTCGTTCCAGACAAAGGCTTTGATTCCAGGGTGCTCTGTACTTTAATGGCAGGAATGTTTAACGGGGAGGGGTCGTCGTCAGTAACTTCATCGCCGTTGCAGCTCTTTCCGTGGTCGTTATCGCCTGGTATAGGATCGCCATACCCTTTTCTAAGGGAGCTGAAATCTGAAGAGAGGGGCTTATGTCTGATTCACCTTCTTCTTGCCTGTGCCAACCAAGTTGCCATTGGCAACATCGAAAATGCCAACGTTGGCCTCGAGCAAATTTCCCACCTAGCTTCGCCCGACGGGGACACAATGCAGCGGATTGCTGCCTACTTCACCGAGGCACTCGCCGATCGGATACTCAAATCGTGGCCAGGCTTACACAAAGCCTTGAACTCGACCAAAATATTGTCGGTCCCGGAAGAGATTCTTGCTCAAAGATTGTTCTTTGAGCTATGTCCTTTCTTGAAGCTTGCATATGTGATAACTAATCAGGCTATCATAGAAGCTATGGAGGGAGAAAGGATGATTCATATTATTGATTTCAAATCATGTGAGCCTGCTCAATGGATAAACCTTCTTCAGACATTGAAAGACCGACCAGACGGTCCGCCCCATGTGAGAATAACCGGAATTCACGAACAGAAGGAGGTGTTGGAACAAATGGCTGTTCGGCTAACCGAAGAGGCCGAAAAATGGGACATACCATTTCAGTTCACCCCAGTTGTTAGCAAGTTAGAGAATCTCGACCTTGAAAGTTTAAGGGTGAAGACAGGAGAAGCACTCGCAGTGAGCTCAGTACTCGAACTTCACACGATTTTAGCCACGGACGACGATAAGACAAAAACGTCGCCATCTGCATCGAAGAACTTGCAAAAGCTCCTACGTATGAAGCAGCGAACGCTCGGAGAGTGGCTGGAAACAGATTCGTTGCAAGTTTTTAGTAGTAGCCCGGATTCGGCATCGGTATGTTCGCCATCAGGATTGAATCCTTCACAAAAGATGAATAGTTTTTTGAATGCACTGTGGGGGCTATCTCCAAAAGTGATGGTAATAACAGAGCAAGAATCAAACCTGAATGGATCAGGGTTGATGGAGAGAGTACTAGAAGCACTAAACTTCTATGCTGCATTGTTTGATTGCTTGGAATCAACGGTGTCGAGGTCGTCGATCGAGCGACAAAGGGTGGAGAAGATGCTTTTAGGAGAGGAAATAAAGAACATCATTGCTTGCGAGGGAGCGGAGAGAAGGGAGAGACACGAAAAGCTCGAGAAATGGATAGTACGATTCGAAAGCGTGGGGTTCGGGAGGGTTGGATTGAGTTATAATAGTATGTTTCTGGGGAATAGATTGTTGCAGAGCAATGGATATGATGGTTATAAAATCAAAGAAGAGAATGGATTTTTGTTCATTTGTTGGCAAGATAGGCCACTTTTTTCTGTATCAGCTTGGGGGTTTCAAAGGCAAAGCTGA 1599 45.34 MFGSVVNSQVLPNCGQLLFASTSDIDKTPSILREEYEFVEGKSSHGKVVPDKGFDSRVLCTLMAGMFNGEGSSSVTSSPLQLFPWSLSPGIGSPYPFLRELKSEERGLCLIHLLLACANQVAIGNIENANVGLEQISHLASPDGDTMQRIAAYFTEALADRILKSWPGLHKALNSTKILSVPEEILAQRLFFELCPFLKLAYVITNQAIIEAMEGERMIHIIDFKSCEPAQWINLLQTLKDRPDGPPHVRITGIHEQKEVLEQMAVRLTEEAEKWDIPFQFTPVVSKLENLDLESLRVKTGEALAVSSVLELHTILATDDDKTKTSPSASKNLQKLLRMKQRTLGEWLETDSLQVFSSSPDSASVCSPSGLNPSQKMNSFLNALWGLSPKVMVITEQESNLNGSGLMERVLEALNFYAALFDCLESTVSRSSIERQRVEKMLLGEEIKNIIACEGAERRERHEKLEKWIVRFESVGFGRVGLSYNSMFLGNRLLQSNGYDGYKIKEENGFLFICWQDRPLFSVSAWGFQRQS 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2748909 2752487 + Cp4.1LG09g04290.1 Cpe09g00431 474797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00431 532 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 66 528 IPR005202 -
Cpe09g00431 532 PANTHER TRANSCRIPTION FACTOR GRAS, SCARECROW-LIKE PROTEIN 3-RELATED 66 528 - -
Cpe09g00431 532 Pfam GRAS domain family 110 526 IPR005202 -
Cpe09g00431 532 ProSiteProfiles GRAS family profile. 101 527 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00431 Cpe-Chr9:2748909 Cpe18g00182 Cpe-Chr18:3426105 0 dispersed
Cpe09g00431 Cpe-Chr9:2748909 Cpe04g00904 Cpe-Chr4:8239401 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49992 PF03514 GRAS 7.10E-135 CL0063 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00431 - - cmo:103489486 883.634