Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00441 ACCCAGAAAAGGCTGAATGATATCTCAGCTCAGTCCACAAATAAGTACTGTGCAGATTGTGGATCTCCAGACCCAAAATGGGTATCGTTGAGTTTTGGGGCATTTATTTGCATCAAGTGCTCTGGAGTACACCGGAGCCTTGGAGTGCACATATCCAAGGTTCTTTCAGTGAAGTTAGATGATTGGACTGATGAACAAGTTGAGGCTTTGATGAGTGCTGGTGGAAATACTGCTGTAAACAAGAAGTATGAAGTTTACATCCCAAAAGGCAACAGAAAACCTAAGCCAGATTCCTCCATAGAGGATCGTCTAGATTTTATAAGGAAAAAATATCAGCTGCTGCAATTTGCAAGCTTTGATGACCAGTTTTTCTGTGCTTTTCCACCCCCGGAGAAGAGAACTTCTAAGGACAATGGAAACCAAGAAAAGCGAAATTATGATAAACAACCAACAAAAAGTCGAATTGGAAATGCATTCCGGAATAGCTGGGGAAGAAAAGATTCTGAACCTGCTATGTTACATTTGATCTTATTGCTTCGACTGTACCGTTTGCAGGCAGGTATGGTTGAATTCATTGGTTTAGTTAAGGTGAACGTGGTTAGAGGAACCAATTTAGCTGTGAGGGACGTCATAACGAGCGATCCGTATGTAATTCTCTCGTTGGGGAATCAATCAGTGAAGACTCGTGTTATAAAGAGCAGTTTGAACCCAGTCTGGAATGAAAGCCTAATGTTGTCTATTCCAGATTTCGTTCCTCCATTAAGGGTGCTTGTATATGACAAAGATACGTTTTCAACCGATGATTTCATGGGTGAAGCAGAAATTGATATCCATCCGCTGCTCTCCGCAGCCCAAGCTTGTGAGAAGTCCACAGCCTGTGAACCCATGCAGCTAGCAAATTGGGTTGCAGGCAAGGAGAACACTCTTGCAAAGGATGGCATCATCAGTCTTGTGGATGGGAAGCCTCGACAAGACGTCTCCTTGAAGCTGCAGAACGTCGAGAGGGGCGTGCTGGATATGGAGCTTGAATGTGTTCCCCTTTCTCAGTAG 1050 43.81 TQKRLNDISAQSTNKYCADCGSPDPKWVSLSFGAFICIKCSGVHRSLGVHISKVLSVKLDDWTDEQVEALMSAGGNTAVNKKYEVYIPKGNRKPKPDSSIEDRLDFIRKKYQLLQFASFDDQFFCAFPPPEKRTSKDNGNQEKRNYDKQPTKSRIGNAFRNSWGRKDSEPAMLHLILLLRLYRLQAGMVEFIGLVKVNVVRGTNLAVRDVITSDPYVILSLGNQSVKTRVIKSSLNPVWNESLMLSIPDFVPPLRVLVYDKDTFSTDDFMGEAEIDIHPLLSAAQACEKSTACEPMQLANWVAGKENTLAKDGIISLVDGKPRQDVSLKLQNVERGVLDMELECVPLSQ 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2825759 2828254 - Cp4.1LG09g04440.1 Cpe09g00441 474807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00441 349 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 2 349 IPR044518 GO:0005096|GO:0005543
Cpe09g00441 349 Gene3D C2 domain 191 346 IPR035892 -
Cpe09g00441 349 SUPERFAMILY ArfGap/RecO-like zinc finger 2 117 IPR037278 -
Cpe09g00441 349 ProSiteProfiles C2 domain profile. 180 291 IPR000008 -
Cpe09g00441 349 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD11-RELATED 2 349 - -
Cpe09g00441 349 SMART arf_gap_3 2 124 IPR001164 GO:0005096
Cpe09g00441 349 MobiDBLite consensus disorder prediction 130 160 - -
Cpe09g00441 349 Gene3D Arf GTPase activating protein 1 123 IPR038508 -
Cpe09g00441 349 CDD ArfGap 5 111 - -
Cpe09g00441 349 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 190 285 IPR035892 -
Cpe09g00441 349 Pfam C2 domain 194 286 IPR000008 -
Cpe09g00441 349 Pfam Putative GTPase activating protein for Arf 3 117 IPR001164 GO:0005096
Cpe09g00441 349 CDD C2_ArfGAP 192 336 - -
Cpe09g00441 349 ProSiteProfiles ARF GTPase-activating proteins domain profile. 2 116 IPR001164 GO:0005096
Cpe09g00441 349 PRINTS HIV Rev interacting protein signature 54 75 IPR001164 GO:0005096
Cpe09g00441 349 PRINTS HIV Rev interacting protein signature 14 33 IPR001164 GO:0005096
Cpe09g00441 349 PRINTS HIV Rev interacting protein signature 33 50 IPR001164 GO:0005096
Cpe09g00441 349 MobiDBLite consensus disorder prediction 135 150 - -
Cpe09g00441 349 SMART C2_3c 194 289 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01210 Cpe-Chr1:7221217 Cpe09g00441 Cpe-Chr9:2825759 0 dispersed
Cpe09g00441 Cpe-Chr9:2825759 Cpe13g00490 Cpe-Chr13:5053254 5.39E-164 dispersed
Cpe09g00441 Cpe-Chr9:2825759 Cpe01g01923 Cpe-Chr1:16392230 3.42E-165 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00441 K12486 - csv:101221541 584.334