Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00442 ATGTTTATGGATGTAGGCATTCTATTGATTAAAATGTCATCTGCAAATCCTTATTTTGATGACGTTCGGACGAAACCAGAGGTAATCGATCCTCCCCAAGATGAGGACATGATGGATGTTAGCGAAAGTGTTAGCGATCCTACTCGAAATGGAGGAAAGCCTAATGTAGCTGTCTCTAGCAGCGTTCGTGAGCTGTTGGAGTGTCCTGTTTGCTTGAATGCTATGTACCCTCCCATTCATCAGTGTTCGAATGGTCACACATTGTGTTCGGGTTGCAAGCCTAGGGTGCACAACCGGTGCCCGACCTGCAGGCATGAACTTGGCAATATCAGATGTCTTGCATTAGAGAAAGTGGCTGCATCTTTGGAACTTCCATGTACATATCAAACCTTTGGGTGCGCGGGCATATACCCGTACTATAGCAAGCTGAAACATGAATCTCAATGTGCATATCGACCCTATAACTGTCCGTATGCGGGGTCGGAATGCACAGTTGTTGGTGATATTCCATTTTTGGTAGCACACCTAAAGGATGATCACAAAGTCGACATGCATAATGGGAGCACTTTCAATCATCGATACGTCAAGTCAAACCCGCAAGAGGTCGAAAATGCTACCTGGATGCTAACGGTTTTCAGCTGTTTTGGTCATTATTTTTGTTTACATTTCGAAGCTTTCCAGCTCGGAATGGCACCTGTCTATATAGCCTTCTTGCGCTTCATGGGTGACGATAACGAGGCGAAGAACTACAGTTATAGCCTTGAGGTTGGTGGAAATGGGAGGAAGATGGTTTGGCAAGGAGTGCCACGGAGTATTCGGGACAGTCATCGGAAGGTGCGAGACAGCTTTGACGGGCTTATTATCCAACGAAACATGGCTCTGTTCTTCTCGGGCGGAGATCGGAAGGAATTGAAGCTGAGGGTAACTGGTAGGATTTGGAAGGAGCAGTGA 951 46.37 MFMDVGILLIKMSSANPYFDDVRTKPEVIDPPQDEDMMDVSESVSDPTRNGGKPNVAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCTYQTFGCAGIYPYYSKLKHESQCAYRPYNCPYAGSECTVVGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGHYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2830330 2834208 - Cp4.1LG09g04450.1 Cpe09g00442 474808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00442 316 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 18 316 - -
Cpe09g00442 316 SUPERFAMILY RING/U-box 62 109 - -
Cpe09g00442 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 176 IPR013083 -
Cpe09g00442 316 SUPERFAMILY TRAF domain-like 121 313 - -
Cpe09g00442 316 ProSiteProfiles Zinc finger SIAH-type profile. 121 181 IPR013010 GO:0008270
Cpe09g00442 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 120 IPR013083 -
Cpe09g00442 316 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 177 309 IPR008974 GO:0005515
Cpe09g00442 316 MobiDBLite consensus disorder prediction 27 56 - -
Cpe09g00442 316 CDD RING-HC_SIAHs 66 104 - -
Cpe09g00442 316 ProSiteProfiles Zinc finger RING-type profile. 68 104 IPR001841 -
Cpe09g00442 316 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 18 316 - -
Cpe09g00442 316 CDD Sina 182 310 - -
Cpe09g00442 316 Pfam Seven in absentia protein family 110 309 IPR018121 GO:0005737|GO:0006511|GO:0007275
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01921 Cpe-Chr1:16382552 Cpe09g00442 Cpe-Chr9:2830330 0 dispersed
Cpe09g00442 Cpe-Chr9:2830330 Cpe13g00488 Cpe-Chr13:5045754 0 dispersed
Cpe01g01211 Cpe-Chr1:7225520 Cpe09g00442 Cpe-Chr9:2830330 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00442 K04506 - csv:101205198 625.165