Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00459 ATGGAGGAGACGAAGCCATCAGCTACAAGTAATTGCCATACTGATGGCGAACCAGACACTGTTGAAGTCCAATTCACAGAATTGTGTCAGAATGGATTACGTCTGGATGAGAGTTGTTGTAATCAAGCGTTGAAGTTATTTAGAGAAACCAAGCACCTTTTGGTGGCGAATATATCAGCAATTGGGAGTGGAATTCCTGAAGAAGCCGAACGTTTTTGGTCTGCTTTTGTTTTATATTCTGTGAAGAGGCTGAGAGATAAGGATCCAGAGAGTTCACACTCAGGACCTGAGAACAATAGCTTCACTTTATGTCATATATTGAGAATTTGCAAGCTGAATATTGTAGAATTTTTTAAAGAGCTGCCTCAGTTTGTTGTTAAAGCCGGTCCAGTATTGAGTAATATCTATGGTGCGGATTGGGAAAATAGACTAGAGGCAAAGGAGTTGCAGGCTAACTTTGTCCATTTGAGCCTCTTAAGCAAGTACTATAAGCGTGTCTACCAAGAATTCTTCTCCACCAGTGATGCTAATGTTGACAAGCAGTCAGCTAAATCCTGCCATACTGGTTACTTGTCTGATTACCATCGTTTTGGATGGTTGTTGTTTTTGGCACTTCGTGTACATGCTTTCAGTCGTTTTAAGGACTTGGTGACCTGCACCAATGGTTTGGTTTCCATTTTGGCTATATTAATTCTTCATGTTCCTGTTCGTTTCAGAAACTTCAACATTCTTGACTCTGAACGCTTCGTTAAGAAAGGAGGAAAAGGAGTGGACCTTCATAGATCACTTTGTAATGTCTATGACACCTCAGAGGAAGAACTGAGGGAAGTAATGGAGAAGGCAAATAGTTTGATAGAAGACATTTTGAAGAAGAAGCCTCGTTTGGCTTCTGAGTGTAACAGTAAAAGCTTGGAGAATATTGACACTGAGGGTTTGATATACTTTGAAGACTTAATGGAGGAGTCATCTCTTTCATCCAGTTTAGAAATTCTAGAAAAGGACTATGAAGATGCAATTCGTAATAAAGGTGAGCTTGATGAGCGGGTGTTTGTTAATGACGAAGATAGTTTACTTGGGTCAGGCAGCTTGTCAGCAGGTGCTGTTACAATGAGTGGCATCAAGAGGAAGTTTGACTCAATGGGCTCACCTGCAAGGATGATAACTAGTCCAATGTCCCCACTTCGCTCTCCTTCACATGTTAATGGCACTCTTAATAGTGGTAATGCAAAACTTGCTGCCACACCTGTTAGCACAGCTATGACTACGGCAAAATGGCTCAGAACTGTTATTTCTCCACTTCCAGCAAGACCTTCACCAGAGATGGAGCGGTTTTTGGCTTCATGTGATAGAGATGTAACTAATGATGTAGTTCGCAGGGCACATATAATATTAGAGGCTATATTTCCAAATAGTGCTCTAGGAGAGCGTTGTATACCTGGAAATTTACAAAGTGCAAACCTCATGGATAACATTTGGGCAGAACAGCGACGACTAGAAGCACTGAAGTTATATTATAGAGTTCTGGAAGCAATGTGCAGAGCAGAGTCTCAGATGCTGCATGTGACTAATTTGACCTCTTTGCTGACTAATGAGAGGTTCCACAGATGTATGCTGGCTTGTTCTGCCGAATTGGTTTTGGCCACACATAAAACTGTTACAATGTTGTTTCCTGCAGTATTGGAGAGAACTGGCATTACAGCTTTTGATCTTAGTAAGGTGATAGAAAGTTTCATTAGACATGAAGAATCACTTCCTAGAGAATTGAGGCGACATCTTAATTCATTGGAAGAACGGCTATTAGAGAGCATGGTATGGGAAAAAGGTTCGTCAATGTATAACTCCCTGATTGTTGCTAAACCTTCCCTTGCTGCTGAAATAAACCGTATGGGTTTATTAGCTGAACCCATGCCATCTTTGGATGCGATTGCTGTTCAAATTAACTTTTCTGGTAGTGGGGTATCAACCATGCCGATTCCGCAAAAGCATGAGAGTTTGCCAGGTCAGAATGGGGATATCAGGTCACCAAAAAGATTGTGCACAGACTTAAGAAGTGTTCTAGTGGAACGGAATTCCTTTACTTCTCCAGTGAAGGACCGTCTCCTGGCGTTCAGTAATATTAAGTCTAAGCTTCTACCACCTCCTTTACAGTCAGCATTTGCAAGTCCTACTCGGCCTAATCCTGGAGGAGGTGGCGAAACATGTGCTGAAACTGGAATTAGCATATTTTTTAGCAAGATCATCAAGTTGGCTGCTGTTAGAGTAAATGGTATGGTGGAAAGGTTGCAGTTATCTCATCAGATCAGGGAGAATGTCTACTGCCTTTTCCAACAGATACTCAGTCAAAAGGCATCATTATTATTTAATCGTCACATTGACCAGATCATCCTCTGTTGTTTCTATGGCGTTGCAAAGATATCTCAATTGAGCCTCACGTTTAGGGAAATCATTTACAACTACAGGAAGCAACCACAATGCAAGCCACAGGTCTTTCGCAACGTGTTTGTCGATTGGTCTTCAGCACGTCGTAATGGGAGATCTGGACAGGATCATGTGGATATAATTACGTTCTACAATGAAATATTTATTCCGTCTGTAAAACCTTTGCTTGTTGAGATTGGCCCAGCTGTTTCGACCATGAAAACCGACAGAGTTCCTCAAGTCATCAATAATAGTGATGCACCTTGTCCTGGATCACCTAAGATATCTCCTTTTCCAAGTCTTCCCGATATGTCTCCAAAGAAAGTATCTTCAGCACATAATGTTTATGTCTCTCCGTTAAGATCATCAAAGGCTATCTTTTACATCGTTTTATTCTTAAAATATCATGTAATAATCTTTATTCTGATGCAACAATTAAGAACACGGAAACTCCGAGGCACGTTAAATTTTGACGATGCGGACGTTGGTTTGGTCAGTGATTCTCTGGTGGCTAACAGCCTTTACCTACAAAATGGAAGTTGTGGATCATCTTCAGGTGCACCAATAAAATCTGAACAACCTGATTCTTAG 3009 41.08 MEETKPSATSNCHTDGEPDTVEVQFTELCQNGLRLDESCCNQALKLFRETKHLLVANISAIGSGIPEEAERFWSAFVLYSVKRLRDKDPESSHSGPENNSFTLCHILRICKLNIVEFFKELPQFVVKAGPVLSNIYGADWENRLEAKELQANFVHLSLLSKYYKRVYQEFFSTSDANVDKQSAKSCHTGYLSDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILILHVPVRFRNFNILDSERFVKKGGKGVDLHRSLCNVYDTSEEELREVMEKANSLIEDILKKKPRLASECNSKSLENIDTEGLIYFEDLMEESSLSSSLEILEKDYEDAIRNKGELDERVFVNDEDSLLGSGSLSAGAVTMSGIKRKFDSMGSPARMITSPMSPLRSPSHVNGTLNSGNAKLAATPVSTAMTTAKWLRTVISPLPARPSPEMERFLASCDRDVTNDVVRRAHIILEAIFPNSALGERCIPGNLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAESQMLHVTNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVAKPSLAAEINRMGLLAEPMPSLDAIAVQINFSGSGVSTMPIPQKHESLPGQNGDIRSPKRLCTDLRSVLVERNSFTSPVKDRLLAFSNIKSKLLPPPLQSAFASPTRPNPGGGGETCAETGISIFFSKIIKLAAVRVNGMVERLQLSHQIRENVYCLFQQILSQKASLLFNRHIDQIILCCFYGVAKISQLSLTFREIIYNYRKQPQCKPQVFRNVFVDWSSARRNGRSGQDHVDIITFYNEIFIPSVKPLLVEIGPAVSTMKTDRVPQVINNSDAPCPGSPKISPFPSLPDMSPKKVSSAHNVYVSPLRSSKAIFYIVLFLKYHVIIFILMQQLRTRKLRGTLNFDDADVGLVSDSLVANSLYLQNGSCGSSSGAPIKSEQPDS 1002
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2987986 2997603 - Cp4.1LG09g04670.1 Cpe09g00459 474825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00459 1002 PANTHER BNACNNG22930D PROTEIN 1 932 - -
Cpe09g00459 1002 Gene3D - 417 605 - -
Cpe09g00459 1002 Pfam Domain of unknown function (DUF3452) 97 233 IPR024599 -
Cpe09g00459 1002 Pfam Retinoblastoma-associated protein B domain 739 866 IPR002719 GO:0005634|GO:0051726
Cpe09g00459 1002 Pfam Retinoblastoma-associated protein A domain 414 615 IPR002720 GO:0005634|GO:0051726
Cpe09g00459 1002 Gene3D - 702 891 - -
Cpe09g00459 1002 SUPERFAMILY Cyclin-like 737 906 IPR036915 -
Cpe09g00459 1002 SMART DUF3452_2 84 233 IPR024599 -
Cpe09g00459 1002 SUPERFAMILY Cyclin-like 422 617 IPR036915 -
Cpe09g00459 1002 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 1 932 IPR028309 GO:0006357|GO:0051726
Cpe09g00459 1002 Coils Coil 328 348 - -
Cpe09g00459 1002 Coils Coil 267 291 - -
Cpe09g00459 1002 Gene3D - 194 352 - -
Cpe09g00459 1002 SMART RB_A_2 414 615 IPR002720 GO:0005634|GO:0051726
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01194 Cpe-Chr1:7112364 Cpe09g00459 Cpe-Chr9:2987986 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49999 PF01858 RB_A 4.40E-64 CL0065 Cpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00459 K04681 - csv:101219810 1759.58