Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00475 ATGCCAGAGCCATTTATGATAAAAACCCTAATTTCTCCTGGATCTGAGATTGCTTCGATGAATTTCTGTGTTGATTGTCCATTGATCGAAATGGCTCGGATAAAAAAGATAATGCAAGCAGATGAGGATGTTGGAAAGATAGCACTGGCAGTACCTGTTTTAGTTTCTAAAGCATTGGAGCTATTCTTGCAAGACCTCTGTGATCGAACTTATGAGATAACTCTACAAAGAGGAGCAAAGACAATGAACTCGTTCCACCTAAAGCACTGTGTACAAAGCTATAGCGTCTTCGATTTTCTGAGGGATATTGTTAGTCGGGTTCCGGATTATGGTCATGGTCATTCTGATGGTGCTGTTGATGATAGAAAGAGGAGGAAGCCCCTTGGTGATGAGGGCAATGATATTGATGAGTTGAAGAAGATCAGGATGCATGACATGAGCCATGGCAGCACTGGTAGAGGAAGAGGAAGAGGACGAGGAAGGGGTCGAGGACGACCAGCTCGAACAGCCGAAAGAGACAACATCCCACCTAATCCCGAAGCCGATGCTTGCACATCTATAGAAAACAGGAACAAGAGCCCCAATCCAGATGTGCAGATGGAGCATCATGTCGAGCCAAGCAAAACAACATCAAAAGAAGTCGGTGAAGAAGCCAATCAAGCTATTCAAAACTTCGATCTTAATGCCGATGTCGTCAATACCAACGAAGACTCCAACAAGACTGTAGCAGTAACAGCAGCAGCAGCAGCAGCAGCCATAATACCAGAAGTGCCTGTCGAACCAACCAGGCCTACCACCACCGAATCCGAGGCTAAAGCTGCTGCTCCTGCTGCTGCTGCTGCTGATGATGAATTCCCCGCCTGGCCTCTCTCGGACGTCGACAAAATGGCAATCGACCCTCTCCAATATGCACATCTCAGCACAAGAGTAGACGAGGAAGAGGAAGATTATGATGAAGAGGAGTAA 966 46.48 MPEPFMIKTLISPGSEIASMNFCVDCPLIEMARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSFHLKHCVQSYSVFDFLRDIVSRVPDYGHGHSDGAVDDRKRRKPLGDEGNDIDELKKIRMHDMSHGSTGRGRGRGRGRGRGRPARTAERDNIPPNPEADACTSIENRNKSPNPDVQMEHHVEPSKTTSKEVGEEANQAIQNFDLNADVVNTNEDSNKTVAVTAAAAAAAIIPEVPVEPTRPTTTESEAKAAAPAAAAADDEFPAWPLSDVDKMAIDPLQYAHLSTRVDEEEEDYDEEE 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3124197 3129779 + Cp4.1LG09g04750.1 Cpe09g00475 474841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00475 321 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 31 320 - -
Cpe09g00475 321 MobiDBLite consensus disorder prediction 110 152 - -
Cpe09g00475 321 MobiDBLite consensus disorder prediction 195 212 - -
Cpe09g00475 321 MobiDBLite consensus disorder prediction 260 281 - -
Cpe09g00475 321 MobiDBLite consensus disorder prediction 110 215 - -
Cpe09g00475 321 Gene3D Histone, subunit A 25 106 IPR009072 GO:0046982
Cpe09g00475 321 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 91 IPR003958 -
Cpe09g00475 321 PANTHER HISTONE SUPERFAMILY PROTEIN 31 320 - -
Cpe09g00475 321 SUPERFAMILY Histone-fold 38 107 IPR009072 GO:0046982
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g01183 Cpe09g00475 CCT
Cpe01g01183 Cpe09g00475 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00475 Cpe-Chr9:3124197 Cpe16g00834 Cpe-Chr16:8017190 5.55E-55 dispersed
Cpe01g01183 Cpe-Chr1:7036369 Cpe09g00475 Cpe-Chr9:3124197 2.07E-134 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50001 PF00808 CBFD_NFYB_HMF 2.90E-17 CL0012 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00475 K21752 - csv:101209714 395.971