Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00495 ATGTCAAATTCTGAAACTGCCGACAGCTCTAATGGCGCCGCCATCGACACCCACAAAAACCAGCCCTCTTCCAACGGAGCCCTCGCCGTTAAAAAGCCCCCTTCCAAGGACCGCCACAGCAAGGTGGACGGCCGTGGCCGTCGCATCCGTATGCCCATAATCTGCGCCGCTCGTGTCTTCCAGCTGACGCGTGAACTTGGTCATAAATCCGATGGCCAAACCATCGAGTGGCTCCTCCGTCAAGCAGAGCCTTCAATTATTGCTGCCACCGGCACCGGCACCACTCCCGCTAATTTCTCTTCCATCTCTCTCTCCGTCAGAGGAAATGCCAGCTCCGCCTCTCTCTCTTCCACTACTTCCACTCTCTCCCTCTCTCGCCCCCAGCCGTTCATTCTTGGCAAACGTGTCAGAGCCGACGATGACGGCGGTACTGACGATGGGTTGGGAGTGGGTCCGAGTGGGTACTGGGCGATTCCGGCCAGACCGGATTACGGGCAGGTGTGGAGTTTCGCGGCTGCCGCCGCCGCGGAACAGGGGATTTCTCAGCCGGCGTCGTTGTTTGCTCAACAGCAGCAGCCGATTAGAGAATCGTCGGCCGCGAGAGTTGGGAATTACCTTCCGGGTCATCTGAATTTACTGGCGTCCTTGTCCGGTGGCGGCGGTGCCGGCCGGCGGGAAGACGACCGTCGTTGA 693 59.6 MSNSETADSSNGAAIDTHKNQPSSNGALAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSISLSVRGNASSASLSSTTSTLSLSRPQPFILGKRVRADDDGGTDDGLGVGPSGYWAIPARPDYGQVWSFAAAAAAEQGISQPASLFAQQQQPIRESSAARVGNYLPGHLNLLASLSGGGGAGRREDDRR 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3289850 3290542 - Cp4.1LG09g04990.1 Cpe09g00495 474861

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00495 230 MobiDBLite consensus disorder prediction 32 47 - -
Cpe09g00495 230 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 226 IPR005333 GO:0003700
Cpe09g00495 230 Coils Coil 225 230 - -
Cpe09g00495 230 MobiDBLite consensus disorder prediction 1 47 - -
Cpe09g00495 230 ProSiteProfiles TCP domain profile. 35 89 IPR017887 -
Cpe09g00495 230 PANTHER TRANSCRIPTION FACTOR TCP21-RELATED 1 226 - -
Cpe09g00495 230 MobiDBLite consensus disorder prediction 1 28 - -
Cpe09g00495 230 Pfam TCP family transcription factor 35 123 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00495 K16221 TCP21, CHE; transcription factor TCP21 (protein CCA1 HIKING EXPEDITION) - csv:101206050 314.694
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01952 Cpe-Chr1:16621055 Cpe09g00495 Cpe-Chr9:3289850 5.99E-21 dispersed
Cpe09g00495 Cpe-Chr9:3289850 Cpe20g00029 Cpe-Chr20:145294 1.64E-42 dispersed
Cpe13g00517 Cpe-Chr13:5277063 Cpe09g00495 Cpe-Chr9:3289850 4.86E-56 transposed
Cpe01g01152 Cpe-Chr1:6847350 Cpe09g00495 Cpe-Chr9:3289850 3.63E-105 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g729 . . . . . . . . Cmo13g00486 . . . . . . Cpe09g00495 . . . . . . . . Cla01g00816 Cam01g0843 Cec01g0837 Cco01g0869 Clacu01g0831 Cmu01g0803 Cre09g1706 . . . . . . . . . . . . . . . . . . . Cma13g00451 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe01g01152 . 36 250 TCP Transcription Factor Family AT5G23280 62.7 3.3e-64 242.3
Cpe09g00495 . 33 230 TCP Transcription Factor Family AT5G23280 58.0 2.1e-58 223.0
Cpe20g00029 CCT,ECH 35 134 TCP Transcription Factor Family AT3G47620 83.0 2.5e-39 160.6
Cpe04g00477 . 33 276 TCP Transcription Factor Family AT3G27010 55.5 5.1e-54 208.8
Cpe01g01152 . 8 248 TCP Transcription Factor Family AT5G08330 55.2 9.6e-61 230.7
Cpe09g00495 . 10 228 TCP Transcription Factor Family AT5G08330 57.0 8.1e-60 227.6
Cpe13g00517 . 1 103 TCP Transcription Factor Family AT5G08330 82.7 3.0e-38 156.0
Cpe04g01456 CCT,CST 31 177 TCP Transcription Factor Family AT5G60970 56.1 2.0e-38 157.1
Cpe03g00977 . 53 164 TCP Transcription Factor Family AT3G02150 66.4 2.2e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001822 4 2 1 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50002 PF03634 TCP 1.30E-33 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00495 Cpe_Chr09 FPKM 0.0 0.0 0.88538 1.131473 0.0 0.453927 0.0 0.221078 0.033004 0.4492