Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00497 ATGGCGGCGGCGGCGGCGGCGAAGAAACAGGAAAATGGGGTCTCCGCCTCAGAGTCCGATGGTATTTCCTCTGTGATTCCTGGATGGTTTTCTGAAATCAGCCAAATGTGGCCGGGAGAGGCGCACTCCTTGAAGGTGGAAAAGATTCTGTTCCAAGGGAAATCTGATTACCAGAATGTTATGGTTTTTCAGGTTCTAGTTATCGGTGGAGGAGATGGCGGTGTCTTGCGAGAGGTAGCTCGCCATTCGTCTGTTGAGAAGATAGACATCTGTGAAATCGACAAGATGGTAGTTGACGTTTCCAAAGAATTTTTCCCTCGCGTAGCTATTGGATACGAGGATCCTCGTGTCACACTTCACGTTGGTGATGGTGTTGCATTTCTGAAGGCTGTTCCTGAAGGCACTTATGATGCTGTTATAGTGGATTCTTCTGATCCTATTGGTCCTGCACAAGAGCTTTTCGAGAAGCCTTTTTTTGCCTCGGTCGCCAAAGCTCTTCGACCGGGAGGTGTCGTGTGTACTCAGGCAGAGAGTATTTGGCTTCACATGAAAATCATTGAAGACATTGTTACAAACTGCCGCCAAGTATTCAAAGGCTCTGTCAACTATGCTTGGACTACAGTTCCTACATATCCAAGCGGAGTGATCGGGTTTATGCTCTGCTCGACCGAGGGACCTCCTGTTGATTTCAAGCATCCAGTCAACCCAGTAGAGGTGAACGGCATCGATACCCAAAACAATCCGCTTAAGTTTTACAACTCCGAGATTCATTCAGCAGCTTTCTGCTTGCCTTCTTTTGCAAAGAAGATCATCGATTCAAAAGCTAATTGA 831 47.17 MAAAAAAKKQENGVSASESDGISSVIPGWFSEISQMWPGEAHSLKVEKILFQGKSDYQNVMVFQVLVIGGGDGGVLREVARHSSVEKIDICEIDKMVVDVSKEFFPRVAIGYEDPRVTLHVGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFASVAKALRPGGVVCTQAESIWLHMKIIEDIVTNCRQVFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHPVNPVEVNGIDTQNNPLKFYNSEIHSAAFCLPSFAKKIIDSKAN 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3299078 3302771 - Cp4.1LG09g05030.1 Cpe09g00497 474863

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00497 276 Pfam Spermine/spermidine synthase domain 64 231 - -
Cpe09g00497 276 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 27 64 IPR030374 -
Cpe09g00497 276 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 65 223 IPR030374 -
Cpe09g00497 276 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 25 272 IPR029063 -
Cpe09g00497 276 Gene3D Vaccinia Virus protein VP39 46 276 IPR029063 -
Cpe09g00497 276 CDD AdoMet_MTases 65 175 - -
Cpe09g00497 276 PANTHER SPERMIDINE/SPERMINE SYNTHASE 64 276 IPR001045 GO:0003824
Cpe09g00497 276 Hamap Polyamine aminopropyltransferase [speE]. 1 272 IPR001045 GO:0003824
Cpe09g00497 276 PANTHER SPERMIDINE/SPERMINE SYNTHASE 13 64 IPR001045 GO:0003824
Cpe09g00497 276 PANTHER SPERMIDINE SYNTHASE-RELATED 64 276 - -
Cpe09g00497 276 Pfam Spermidine synthase tetramerisation domain 28 64 IPR035246 -
Cpe09g00497 276 PANTHER SPERMIDINE SYNTHASE-RELATED 13 64 - -
Cpe09g00497 276 Coils Coil 270 276 - -
Cpe09g00497 276 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 65 78 IPR030373 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00497 K00797 speE, SRM, SPE3; spermidine synthase [EC:2.5.1.16] - csv:101213410 471.085
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01521 Cpe09g00497 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00606 Cpe-Chr5:3689453 Cpe09g00497 Cpe-Chr9:3299078 7.21E-123 dispersed
Cpe09g00034 Cpe-Chr9:211486 Cpe09g00497 Cpe-Chr9:3299078 8.54E-119 dispersed
Cpe09g00497 Cpe-Chr9:3299078 Cpe18g00837 Cpe-Chr18:7732154 1.29E-76 dispersed
Cpe01g01521 Cpe-Chr1:9109793 Cpe09g00497 Cpe-Chr9:3299078 4.04E-180 wgd
Cpe07g00002 Cpe-Chr7:5608 Cpe09g00497 Cpe-Chr9:3299078 1.96E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g740 Blo01g00399 . Bda01g02226 . Bpe13g00491 Bpe10g00833 Bma14g01785 Bma15g00191 . Cmo18g00810 . Cma18g00807 . Car18g00739 . Cpe09g00497 Cpe01g01521 . . . . . . . Cla05g02529 Cam05g2719 Cec05g2750 Cco05g2791 Clacu05g2721 Cmu05g2575 Cre05g2689 Cone13ag1032 Cone19ag1023 Cone8ag0653 . Lsi04g00535 Csa05g02348 Chy10g00915 Cme10g00511 Blo06g00871 Blo11g00905 Bda07g01594 . . . Bma01g00055 . . . . Cma04g01719 . Car04g01751 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000582 4 4 3 5 5 3 5 3 3 3 3 3 4 3 3 5 3 3 4 3 3 6 2 4 4 3 3 4 3 2 106
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00497 Cpe_Chr09 FPKM 5.06216 4.711685 3.718061 3.591855 9.177467 9.947993 12.5555 3.198731 3.302976 4.675841