Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00500 ATGATACGTCACCTGCTAGACTCACCCGCTGAAAGAGAAACAGGCAATTTCATCTCCCTCGCCTCGTGCTTCTGTAGGGGTTCCGAGATCGTTTCTACGGTTCCTTCCTTCCTTCCTTCCCTCCCCCACCTTCACTCTCTAGGGCACAGCAATCTGAAGGATTGGTCTGGAAGCCTTCGACTTCCTCCCGATCTTTTCTCTTCTTCCATGGCGGACTCTTCTTCTTCCTCTGCAACCCTCGATTCAAATCCTCAAGCTGCCGAGCCCGAAAACCCCAATCCACAGGGCAAGAAGCCTGAATCTGCCGCTTCTTCTTTTCCTCCTACGCAATCGTTACCACCAGCAACGATTTCTGTTGGAATAAACCCTACCTTGCATTCACCGTTGGTGTCCACGCCGCAACCGCCTCCTTCTTTATCGTATGGCCCGCCGCCCGGTACTGTGGCTGTTCCTCCGACGGCTCCGTCTTTTCGGCCGGTGCCTCTCGGAGTTCATCAGTTCTCGCCTATGCCTGGCACTGGCATGCTGAACCCAAGCTATCCAAACCCTGGGGTTCAGCCTCCCGGTGTTAGTTCGGTTCCGGCGCCTGCTCCTGGTATGGCAAGTGGCGTTACGGGAGCTGTTCCAGTTCCAGCGCCTCAACAGATGATGGCTTATCAAGTTCCACCGGGTCAGGTTCCAAATCCGGCGATGAGGCCGTACGCCACTATGCCTAATGGTTTCGCAGCTGCTACTCCTCAAGGAGCATTTCTTCCCCCTGGAGTTCCTCGTTTTGCTTCTCCATTTCCTGGTATGATTCGGACACCTTTTCCTCCACGCCCACCTGGTGCTATGGGCATGATGCCAGGAATGCCACGGCCTCCTGTTCCAGGGATTCCTGGTCTATGTGGACCAGTGAAGAGTTGGAAACGGGCCCAAGATCCTTCAGATGGAACTCCTAGAACCTTTGGATTCTGTGAGTTTGAGTCTGCTGAAGGTGTTCTTCGTGCACTACGATTACTGACGAAGTTAAACATTGATGGACAAGAGCTAGTGCTAAAAGGTACTCAAGCAACAAGAGATTATCTGAAGCGATATGTTGAAAAGAAAGCAGAGAATTCAAAAAAACTGAAAGAAACACAAGTTTCAGAGACTAAGGAAGATGAAGCTGATATAGCGAATGTGGCAAAAAATGAAACTTCAAAGCCCCCTGCAGAGGATTCAAAAGAGGACCGTGATTCAGGGGAAAAGGAAGATCATGACATTGCCTGTTCTGCAGTTTTAAGTGATGAAGATAGAGAGGCTGATCGAGAGGCATCAGAAAAGCTTACAAATTCTCTGGAGGAGAGGTTGAAGTCTAGACCTCTGCCACCACCTCCTCTACTGACAACTGCTGATGTTTCTGGAAATTCAAGTGCAGAGCCATCTGCTAAACTGAAAGATGGTGAATATGACGTTGATATTTTGAAAAGTGATGTAGCTGATGATAGAAATGATGACGATTCAACTAGCGACAATAAACAAACTAGTGAGCAGTACGACAAGCCTGAAACAAGCTCACCTGATAGAAGTAGAAGGTATGACAGGAGAAGTCGAGAAAGAGACAGGGAGCGAGATTTAAAAAGGGACAAGGAGCGGGAAATTGAGAGATATGAAAGGGAGACAGAGCGGGAACGAGCTAGGAAAGACAGGGAACAAAGAAGAAAGATTGAGGAGATTGAGCGACAGTATGAAGAATGTCTTAAAGAGTGGGAATATCGAGAAAGAGAGAGAGAAAAGCAGAGGCAGTATGAGAAGGAGAGAGAGAAAGAGAAAGAGCGTAAAAGGAAGAAAGAGATTATGTATGATGAAGATGATGAGGATGATGATTCAAGAAGAAAATGGCGCAGAGGTGCTCTGGAGGAAAAGAGGAAGAAGAGGTCTAGAGAAAAGGAAGATGATTCAGTTGATAGACAGAGAGAGGAAGAAGAAATTGCCGAGGCCAAAAGAAAGGCCGAGGAGGAACAGCTGCAAAAACAGAGAGATCCACCCAAACTTCTACCTGGTCAGATGATGAATATCGACGAGAAAATTGTTCTTCCTGAAGAACCTGCTAACGAGATTAAATTTTTGACTTCAGAACATGATTCTGAGCTTGACTCGGGCCGTGAGAACCATATAGGGGACGGGTTTTTACAAAATGGTAGTGGTGATGAATTAAATATAATACCATCAGAGACCCGTCAGAGTGAAGGCTTGCCTGCAAAAAGGTTAGGATTTGGTATAGTAGGTTCTGGAAAACGGACTACTGTACCTTCAGTTTTTCACGAGGAGGATGATGAAGCACAGAAAGAGAAGAAAATGAGGCCACTGGTTCCAATTGATTACTCAGCTGAGGAACTCCAAGCTGTGCAGCCTTCTAGTACTGGGGCTCTGCCACCAAATTTAGCTGCAGCAGCCGAATTTGCAAAACGTATATCAAATGTTAATTCTAAAGAAGAGAAGCCTGACAGTGAAAGGGAGCGAGGAAGGCGTCCCAGTGAAAGATCTAGTCAGCGGGATAGAGACCGAAATGATGAAGATACCTATCGCAGCAAAGATGAGAACAAGACAACAGACAGAGATAGGGAGCGAGACCGTGTTTTGGATAAAGTAAAAACGCCAGACAACAAAAAGCTGTTGGATGCGAAACAGTTGATTGATATGATTCCCAAGACAAAGGAGGAATTATTCTCATACGACATAAATTGGGCAATTTATGAAAAGCATGCATTACATGAGAGAATGAGACCGTGGATTTCGAAAAAGATAACAGAGTTTTTGGGGGAAGAGGAAACCACTCTTGTCGATTACATAGTTTCGAGTACTCAGGAACACGTAAAAGCATCTCAAATGCTGGAGCTGCTTCAGTCAATTTTGGATGAAGAAGCTGAAATGTTCGTTCTGAAGATGTGGAGAATGCTTATCTTCGAAATAAAAAAGGTAGAAACTGGTCTAGCTTTCAGATCAAAAGCATGA 2976 46.0 MIRHLLDSPAERETGNFISLASCFCRGSEIVSTVPSFLPSLPHLHSLGHSNLKDWSGSLRLPPDLFSSSMADSSSSSATLDSNPQAAEPENPNPQGKKPESAASSFPPTQSLPPATISVGINPTLHSPLVSTPQPPPSLSYGPPPGTVAVPPTAPSFRPVPLGVHQFSPMPGTGMLNPSYPNPGVQPPGVSSVPAPAPGMASGVTGAVPVPAPQQMMAYQVPPGQVPNPAMRPYATMPNGFAAATPQGAFLPPGVPRFASPFPGMIRTPFPPRPPGAMGMMPGMPRPPVPGIPGLCGPVKSWKRAQDPSDGTPRTFGFCEFESAEGVLRALRLLTKLNIDGQELVLKGTQATRDYLKRYVEKKAENSKKLKETQVSETKEDEADIANVAKNETSKPPAEDSKEDRDSGEKEDHDIACSAVLSDEDREADREASEKLTNSLEERLKSRPLPPPPLLTTADVSGNSSAEPSAKLKDGEYDVDILKSDVADDRNDDDSTSDNKQTSEQYDKPETSSPDRSRRYDRRSRERDRERDLKRDKEREIERYERETERERARKDREQRRKIEEIERQYEECLKEWEYREREREKQRQYEKEREKEKERKRKKEIMYDEDDEDDDSRRKWRRGALEEKRKKRSREKEDDSVDRQREEEEIAEAKRKAEEEQLQKQRDPPKLLPGQMMNIDEKIVLPEEPANEIKFLTSEHDSELDSGRENHIGDGFLQNGSGDELNIIPSETRQSEGLPAKRLGFGIVGSGKRTTVPSVFHEEDDEAQKEKKMRPLVPIDYSAEELQAVQPSSTGALPPNLAAAAEFAKRISNVNSKEEKPDSERERGRRPSERSSQRDRDRNDEDTYRSKDENKTTDRDRERDRVLDKVKTPDNKKLLDAKQLIDMIPKTKEELFSYDINWAIYEKHALHERMRPWISKKITEFLGEEETTLVDYIVSSTQEHVKASQMLELLQSILDEEAEMFVLKMWRMLIFEIKKVETGLAFRSKA 991
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3315065 3321826 - Cp4.1LG09g05040.1 Cpe09g00500 474866

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00500 991 MobiDBLite consensus disorder prediction 67 90 - -
Cpe09g00500 991 MobiDBLite consensus disorder prediction 581 667 - -
Cpe09g00500 991 Coils Coil 527 576 - -
Cpe09g00500 991 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 295 990 - -
Cpe09g00500 991 MobiDBLite consensus disorder prediction 395 442 - -
Cpe09g00500 991 MobiDBLite consensus disorder prediction 581 676 - -
Cpe09g00500 991 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 295 990 - -
Cpe09g00500 991 MobiDBLite consensus disorder prediction 129 154 - -
Cpe09g00500 991 Coils Coil 988 991 - -
Cpe09g00500 991 MobiDBLite consensus disorder prediction 366 388 - -
Cpe09g00500 991 MobiDBLite consensus disorder prediction 66 154 - -
Cpe09g00500 991 MobiDBLite consensus disorder prediction 97 128 - -
Cpe09g00500 991 SUPERFAMILY RNA-binding domain, RBD 296 347 IPR035979 GO:0003676
Cpe09g00500 991 SMART pwi_2 907 980 IPR002483 GO:0006397
Cpe09g00500 991 ProSiteProfiles PWI domain profile. 894 991 IPR002483 GO:0006397
Cpe09g00500 991 SUPERFAMILY PWI domain 912 979 IPR036483 GO:0006397
Cpe09g00500 991 MobiDBLite consensus disorder prediction 471 562 - -
Cpe09g00500 991 MobiDBLite consensus disorder prediction 701 779 - -
Cpe09g00500 991 Coils Coil 580 607 - -
Cpe09g00500 991 MobiDBLite consensus disorder prediction 366 562 - -
Cpe09g00500 991 MobiDBLite consensus disorder prediction 758 779 - -
Cpe09g00500 991 Coils Coil 637 664 - -
Cpe09g00500 991 Gene3D - 294 384 IPR012677 -
Cpe09g00500 991 MobiDBLite consensus disorder prediction 813 870 - -
Cpe09g00500 991 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 344 IPR000504 GO:0003723
Cpe09g00500 991 Pfam PWI domain 914 977 IPR002483 GO:0006397
Cpe09g00500 991 CDD RRM_RBM25 296 356 IPR034268 -
Cpe09g00500 991 Gene3D PWI domain 870 986 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00500 K12822 RBM25, S164; RNA-binding protein 25 - csv:101214372 973.77
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01526 Cpe09g00500 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01526 Cpe-Chr1:9140562 Cpe09g00500 Cpe-Chr9:3315065 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g730 . . . . . . Bma14g01788 . . Cmo18g00807 . Cma18g00802 . Car18g00734 . Cpe09g00500 Cpe01g01526 Bhi07g01719 Tan04g1224 Cmetu10g0122 Lac13g0206 Hepe10g1646 . . Cla05g02535 Cam05g2726 Cec05g2756 Cco05g2797 Clacu05g2727 Cmu05g2580 Cre05g2694 Cone13ag1035 Cone19ag1026 . . Lsi04g00542 Csa05g02342 Chy10g00909 Cme10g00517 . Blo11g00910 Bda07g01597 . . . . . . . . Cma04g01727 . Car04g01759 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003580 1 6 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 3 5 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00500 Cpe_Chr09 FPKM 0.0 0.350728 3.968567 2.187854 3.535362 3.947969 2.576688 0.769836 1.68597 1.141413