Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00502 ATGGATCTTCTCCAGTCGTACACAGATCAAAACGACGATGATGGAAGCCCTAAACAGCTTACATCTTCACCGGAAGCCTCTCCGCCGCGGCTCCTCCCCTCCAAAACCTCGGCGCCCAAGGTTGATGATACAATGTTGGCTCTTACGGTGGCCAACGCCAACAGGACATTATCTAAGCCGATAGACCCAACTCAACATCTAGTTGCCTTCAACCCTACCTACGACCAGCTCTGGGCGCCCATTCTCGGGCCATCTCATCCCTATGCCAAGGATGGCATTGCACAGGGCATGAGAAACCATAAGCTTGGCTTTGTTGAGGATGCGTCCATTGAGCCATTTGTATTTGATGAGCAGTACAACACTTTCCACAAATATGGATATGCTGCTGACCCTTCAGCTTCTGCTGGAAACAATTTCATTGGGGATATGGAGGCTTTGCAGAAGAATGATGCCATATCCGTGTATAACATTCCACAGCATGAGCAAAAGAAGCGGAAGATTGAGAAGAAGAAAGAAATGAGTGAGAGTGAGGATGTGGAAATGGAGTTGAACCCGGCTGAAGTTGATAACCCGGCGAGTGATGTGTGGTTGATGAAGAATAGGAAGAGCCCTTGGTCTGGGAAGAAGGAAGGTCTGCAAACTGAGCTAACTGAGGAGCAGAAGAAGTACGCAGAAGAGTATGCAAAGAAGAAAGGTGAAGAGAAAGGTGGTGAGAAGGGAGAAGTTACAGCAGATAAGAGTACTTTTCATGGTAAAGAGGAGAGGGACTATCAGGGTAGATCTTGGATTGCACCACCGAAGGACGCCAAGGCCACAAATGATCATTGTTATATACCGAAAAGATTGGTGCATACATGGAGTGGGCACACAAAGGGTGTATCTGCTATTAGATTCTTCCCTAAACATGGTCATTTGATTCTTTCAGCGGGTATGGATACCAAGGTGAAGATATGGGATGTGTTCAATTCTGGGAAATGTATGAGAACCTACATGGGTCACTCTCAGGCAGTTCGGGATATTTCGTTTTGTAACGATGGGTCCAAGTTCTTGACTGCTGGGTATGATAAAAAGATTAAGTATTGGGATACAGAAACAGGGCAAGTGATATCAACCTTCTCCACCGGGAAAATTCCTTATGTAGTTAAGCTCAATCCTGATGATGATAAGCAGAATATTTTGCTGGCAGGGATGAGTGATAAGAAGATCGTTCAGTGGGATATGAACACAGGGCAGATTACTCAAGAGTACGATCAACATTTAGGAGCAGTGAATACCATTACATTTGTAGACAATAATAGGAGGTTTGTCACGTCAAGTGACGACAAGTCGCTCCGTGTTTGGGAATATGGGATTCCTGTTGTTATTAAGTATATTAGTGAGCCTCATATGCATTCCATGCCCTCCATATCGGTACACCCCAATACGAATTGGCTTGCAGCACAGAGTTTAGACAATCAAATTCTTATCTATAGCACTAGGGAGAGATTTCAGCTAAACAAGAAGAAGAGGTTTGCTGGCCACATTGTGGCAGGATACGCTTGTCAGGTCAATTTTTCACCAGATGGACGCTTTGTTATGTCTGGTGATGGTGAGGGTAAATGCTGGTTTTGGGACTGGAAAACCTGCAAGGTATTCAGAACTCTCAAGTGTCACGAAGGAGTATGCATTGGCTGTGAGTGGCATCCATTAGAACAGAGTAAAGTAGCAACGTGTGGCTGGGATGGACTGATAAAGTATTGGTAA 1743 45.04 MDLLQSYTDQNDDDGSPKQLTSSPEASPPRLLPSKTSAPKVDDTMLALTVANANRTLSKPIDPTQHLVAFNPTYDQLWAPILGPSHPYAKDGIAQGMRNHKLGFVEDASIEPFVFDEQYNTFHKYGYAADPSASAGNNFIGDMEALQKNDAISVYNIPQHEQKKRKIEKKKEMSESEDVEMELNPAEVDNPASDVWLMKNRKSPWSGKKEGLQTELTEEQKKYAEEYAKKKGEEKGGEKGEVTADKSTFHGKEERDYQGRSWIAPPKDAKATNDHCYIPKRLVHTWSGHTKGVSAIRFFPKHGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSQAVRDISFCNDGSKFLTAGYDKKIKYWDTETGQVISTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEYGIPVVIKYISEPHMHSMPSISVHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKTCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3338145 3339887 - Cp4.1LG09g05060.1 Cpe09g00502 474868

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00502 580 MobiDBLite consensus disorder prediction 163 183 - -
Cpe09g00502 580 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 286 320 - -
Cpe09g00502 580 MobiDBLite consensus disorder prediction 1 30 - -
Cpe09g00502 580 ProSiteProfiles Trp-Asp (WD) repeats profile. 330 371 IPR001680 GO:0005515
Cpe09g00502 580 Gene3D - 266 580 IPR015943 GO:0005515
Cpe09g00502 580 SUPERFAMILY WD40 repeat-like 277 580 IPR036322 GO:0005515
Cpe09g00502 580 MobiDBLite consensus disorder prediction 229 257 - -
Cpe09g00502 580 ProSiteProfiles Trp-Asp (WD) repeats profile. 416 448 IPR001680 GO:0005515
Cpe09g00502 580 MobiDBLite consensus disorder prediction 1 38 - -
Cpe09g00502 580 SMART WD40_4 323 362 IPR001680 GO:0005515
Cpe09g00502 580 SMART WD40_4 541 580 IPR001680 GO:0005515
Cpe09g00502 580 SMART WD40_4 452 491 IPR001680 GO:0005515
Cpe09g00502 580 SMART WD40_4 279 319 IPR001680 GO:0005515
Cpe09g00502 580 SMART WD40_4 497 538 IPR001680 GO:0005515
Cpe09g00502 580 SMART WD40_4 409 448 IPR001680 GO:0005515
Cpe09g00502 580 SMART WD40_4 365 406 IPR001680 GO:0005515
Cpe09g00502 580 Pfam WD domain, G-beta repeat 324 362 IPR001680 GO:0005515
Cpe09g00502 580 Pfam WD domain, G-beta repeat 410 447 IPR001680 GO:0005515
Cpe09g00502 580 Pfam WD domain, G-beta repeat 281 319 IPR001680 GO:0005515
Cpe09g00502 580 Pfam WD domain, G-beta repeat 503 538 IPR001680 GO:0005515
Cpe09g00502 580 PANTHER PRE-MRNA-PROCESSING FACTOR 17 41 580 IPR032847 GO:0000398|GO:0071013
Cpe09g00502 580 PRINTS G protein beta WD-40 repeat signature 306 320 IPR020472 -
Cpe09g00502 580 PRINTS G protein beta WD-40 repeat signature 349 363 IPR020472 -
Cpe09g00502 580 PRINTS G protein beta WD-40 repeat signature 435 449 IPR020472 -
Cpe09g00502 580 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 330 367 - -
Cpe09g00502 580 CDD WD40 282 580 - -
Cpe09g00502 580 Coils Coil 209 229 - -
Cpe09g00502 580 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 416 448 - -
Cpe09g00502 580 ProSitePatterns Trp-Asp (WD) repeats signature. 306 320 IPR019775 -
Cpe09g00502 580 Coils Coil 157 177 - -
Cpe09g00502 580 ProSiteProfiles Trp-Asp (WD) repeats profile. 286 320 IPR001680 GO:0005515
Cpe09g00502 580 MobiDBLite consensus disorder prediction 163 178 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00502 K12816 CDC40, PRP17; pre-mRNA-processing factor 17 - csv:101214854 1137.48
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01528 Cpe09g00502 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00502 Cpe-Chr9:3338145 Cpe10g00519 Cpe-Chr10:3042569 1.80E-29 dispersed
Cpe01g00843 Cpe-Chr1:4993215 Cpe09g00502 Cpe-Chr9:3338145 9.17E-48 transposed
Cpe01g01528 Cpe-Chr1:9157421 Cpe09g00502 Cpe-Chr9:3338145 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g723 . . . . . Bpe10g00836 Bma14g01790 Bma15g00188 . Cmo18g00805 . . . Car18g00732 Sed06g1635 Cpe09g00502 Cpe01g01528 Bhi07g01722 Tan04g1228 Cmetu10g1166 . Hepe10g1644 . . Cla05g02538 Cam05g2728 Cec05g2758 Cco05g2799 Clacu05g2729 Cmu05g2582 Cre05g2696 . . . Cone12ag0639 Lsi04g00546 Csa05g02340 Chy10g00907 Cme10g00519 Blo06g00874 Blo11g00912 Bda07g01599 . . . . . . . . Cma04g01729 . Car04g01761 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004325 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00502 Cpe_Chr09 FPKM 1.546271 0.0 1.520867 0.960399 1.791722 1.906764 1.62134 2.205086 1.277646 2.098027