Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00513 ATGGAAGAAATGTACGGTTTGCAATCGACGGCGGAGTATTCTGATAAGGCGTTGATGTCACCGGAGAATCTGATTCTGCCTCCGGATTATCAGAGCCTACTGGTTAGTTCTGGAGAGTTTCGCGATCGGATTCCGGTGTTTGGATCCAACGAACTGCTTTCGGCGGCGGCTTCGGTCATATCGGAAGCTGAAGCAGCGTCGATCACGATGGAAATTCAATGTGAAGAAGATATGGTGAACGTGATCAAAGCTAAAATTTCTTCTCATCCTACTTATCCTCGATTGCTCGACGCCTATATTGACTGCCAAAAGGTAGGAGCGCCTCCGGCGATTTCACATTTGTTAGAGGGAATCCGTCAAGAAAGCGACATTTGTAACCGTCACGCTGTAGCCACGTGCTTAGGCGTCGATCCTGAACTCGATGAATTCATGGAAACGTACTGCGATATGTTGGTGAAGTACAAATCAGATCTCAAGAGGCCTTTCGACGAAGCAACCACGTTCTTGAATAAGATCGAGCTGCAACTTAGTAACCTCTGCAATGGCGCCTTCTCCAGAAGCCTTTCCGATGAAGGAGCTGCCTCGTCGGATGAAGAGTTGAGTGGAGGAGAGATGGAAGCTGTGGAGGCGGAGACTCAAACCAAAGGCGAGAAAAGGGATCTCAAGGATAAGCTATTACGTAGATTTGGCAGTCATATTAGTAGCTTAAAATTGGAGTTCTCAAAGAAGAAGAAAAAAGGAAAATTACCAAAAGAAGCCAGGCAAACCCTCCTTGAATGGTGGAATGTTCACTATAAATGGCCATATCCTACGGAAGCCGATAAGGTTGCACTGGCAGAGAGAACAGGGCTTGACCAGAAGCAAATTAACAATTGGTTCATAAATCAGCGGAAACGCCACTGGAAGCCATCAGAGAATATGCAGTTGGAAGGAATGGATGAGCTTTCTTCAGGTAGATTCTTCAGAGAGGACTGA 975 46.36 MEEMYGLQSTAEYSDKALMSPENLILPPDYQSLLVSSGEFRDRIPVFGSNELLSAAASVISEAEAASITMEIQCEEDMVNVIKAKISSHPTYPRLLDAYIDCQKVGAPPAISHLLEGIRQESDICNRHAVATCLGVDPELDEFMETYCDMLVKYKSDLKRPFDEATTFLNKIELQLSNLCNGAFSRSLSDEGAASSDEELSGGEMEAVEAETQTKGEKRDLKDKLLRRFGSHISSLKLEFSKKKKKGKLPKEARQTLLEWWNVHYKWPYPTEADKVALAERTGLDQKQINNWFINQRKRHWKPSENMQLEGMDELSSGRFFRED 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3419266 3427130 + Cp4.1LG09g05110.1 Cpe09g00513 474879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00513 324 SUPERFAMILY Homeodomain-like 241 313 IPR009057 -
Cpe09g00513 324 ProSiteProfiles ELK domain profile. 220 240 IPR005539 GO:0003677
Cpe09g00513 324 ProSiteProfiles 'Homeobox' domain profile. 240 303 IPR001356 GO:0003677
Cpe09g00513 324 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 1 313 - -
Cpe09g00513 324 Pfam KNOX1 domain 82 123 IPR005540 GO:0003677|GO:0005634
Cpe09g00513 324 SMART KNOX2_2 130 181 IPR005541 GO:0003677|GO:0005634
Cpe09g00513 324 SMART ELK_2 220 241 IPR005539 GO:0003677
Cpe09g00513 324 Gene3D - 238 314 - -
Cpe09g00513 324 CDD homeodomain 252 304 IPR001356 GO:0003677
Cpe09g00513 324 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 313 - -
Cpe09g00513 324 Pfam KNOX2 domain 134 180 IPR005541 GO:0003677|GO:0005634
Cpe09g00513 324 ProSitePatterns 'Homeobox' domain signature. 278 301 IPR017970 GO:0000981|GO:0006355
Cpe09g00513 324 SMART KNOX1_2 80 124 IPR005540 GO:0003677|GO:0005634
Cpe09g00513 324 Pfam ELK domain 220 241 IPR005539 GO:0003677
Cpe09g00513 324 Pfam Homeobox KN domain 260 299 IPR008422 GO:0003677|GO:0006355
Cpe09g00513 324 SMART HOX_1 242 307 IPR001356 GO:0003677
Cpe09g00513 324 MobiDBLite consensus disorder prediction 191 216 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g01546 Cpe09g00513 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00228 Cpe-Chr6:1210210 Cpe09g00513 Cpe-Chr9:3419266 4.90E-82 dispersed
Cpe07g00541 Cpe-Chr7:3587464 Cpe09g00513 Cpe-Chr9:3419266 5.65E-76 dispersed
Cpe07g00857 Cpe-Chr7:7771796 Cpe09g00513 Cpe-Chr9:3419266 4.70E-78 dispersed
Cpe09g00513 Cpe-Chr9:3419266 Cpe11g00875 Cpe-Chr11:7100812 8.87E-78 dispersed
Cpe19g00947 Cpe-Chr19:6757566 Cpe09g00513 Cpe-Chr9:3419266 3.42E-72 dispersed
Cpe01g01547 Cpe-Chr1:9233599 Cpe09g00513 Cpe-Chr9:3419266 4.85E-75 transposed
Cpe01g01546 Cpe-Chr1:9228197 Cpe09g00513 Cpe-Chr9:3419266 4.06E-127 wgd
Cpe11g00023 Cpe-Chr11:125984 Cpe09g00513 Cpe-Chr9:3419266 7.68E-140 wgd
Cpe04g01564 Cpe-Chr4:12250525 Cpe09g00513 Cpe-Chr9:3419266 1.55E-102 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50003 PF03791 KNOX2 1.20E-24 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00513 - - csv:101211876 589.726