Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00533 ATGAAGTTTATGAAACTTGGATCTCGACCAGACACTTTCTACACTGCTGAGGCTGTAAGGTCAGTTTCTTCTGAAGTCTCTAGTGATCTCATAATTCAAGTGAAAGGAAGTAGATATCTCCTTCACAAGTTTCCTCTTCTGTCCAAGTGTTTACGCCTGCAGAAACTATGCGCCGAGTCCCCGGAATCCTCACTGCATCAAATAGTCCAGCTTCCTGATTTTCCAGGCGGCCTAGAGGCGTTCGAACTATGTGCAAAGTTCTGTTATGGTATAACGATTACTCTCAGTGCTCACAACATTGTATCGGCTCGATGTGCGGCCGAGTATCTTCAGATGACAGAGGATGTAGAGAAGGGGAATTTAATTTACAAGCTTGAAGTGTTCTTCAGTTCTTGCATTCTTCATGGTTGGAGAGATACAATTGTGACATTGCAAAGCACCAAAGCATTTCCTTGGTCAGAGGAGCTTGGAATCACAAGCAAATGTATAGAAGTGATTGCATCAAAAATCCTTATTCATCCATCAAAAGTGAATCTTTCACATAGTCATTCCCGACGACTTAAGGACGATATCTCGTGCAATGGCATCGATAGCCAACGACACAAACAGGCAACCAGGGGTTGGTGGGCTGAAGATGTTGCAGAACTCAACATAGACCTCTACTGGAGAACCATGATAGCTATTAAATCACATGGGAAAGTGCCCTCCAATTTAATTGGAGATGCACTGAAAGTTTATGCTTCGAAATGGCTACCGAGTATATCGAGGAACGATTTTGTCGATGCATCTGACTCGGATTCAGACAAGGCCAATGAGTTATCTGCAAAGCACAGACTGCTCTTGGAATCACTAATAAGCTTACTCCCAGCAGAGAAAGGTTCTGCTTCTTGCAGTTTCCTTCTCAAACTTCTAAAAGCAGCCAACATTCTTAGTGCCTCGCCTGCTTCAAAAATGGAACTGGCCAGAAGAGTGGGAGTCCAATTAGAGGAAGCAATGGTCATAGATTTGTTAATACCTTCCCTATCATACACAACTCAGATGGCACATCCAGACATGGGAAAGAGCGAAAGGAAGCGATTATGTCGAATTCTCGACTGCAAAAAACTCTCCGTTGAGGCTTGTATGCACGCTGCACAAAACGAGCTACTCCCTTTAAGGGTAGTGGTCCAAGTCCTCTTCTTTGAGCAAGCAAAGGCAACAATGGCTGGTAGCAAAGTGGCCGAGCTGCCAAGCAACATAAAGGCACTTTTGGCTGCCCATAATATCGACCCGTCGAAGCCACCAGCACCATTAAGTACTACCACGAGCGTTCAAGCAGACGACCAACAGAGCATCTCAGGGTTGAAATCACCAAAATCCAAGCTTTCTACCTTGCAAATGAAGCTAGCTGAAGATGACTACTTGAATGAAAATGAGATGCACCCTGATGGAATGTCAAGGCCCTCTAAGTTCAAGGCTTTCTGTTCTCTCCCGACTCGACCGAAACGGATCTTCAGTAAGTTATGGTTTACTAACAGAAGTATCATAGAGAAGAATTGA 1539 44.25 MKFMKLGSRPDTFYTAEAVRSVSSEVSSDLIIQVKGSRYLLHKFPLLSKCLRLQKLCAESPESSLHQIVQLPDFPGGLEAFELCAKFCYGITITLSAHNIVSARCAAEYLQMTEDVEKGNLIYKLEVFFSSCILHGWRDTIVTLQSTKAFPWSEELGITSKCIEVIASKILIHPSKVNLSHSHSRRLKDDISCNGIDSQRHKQATRGWWAEDVAELNIDLYWRTMIAIKSHGKVPSNLIGDALKVYASKWLPSISRNDFVDASDSDSDKANELSAKHRLLLESLISLLPAEKGSASCSFLLKLLKAANILSASPASKMELARRVGVQLEEAMVIDLLIPSLSYTTQMAHPDMGKSERKRLCRILDCKKLSVEACMHAAQNELLPLRVVVQVLFFEQAKATMAGSKVAELPSNIKALLAAHNIDPSKPPAPLSTTTSVQADDQQSISGLKSPKSKLSTLQMKLAEDDYLNENEMHPDGMSRPSKFKAFCSLPTRPKRIFSKLWFTNRSIIEKN 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3579924 3587628 - Cp4.1LG09g05400.1 Cpe09g00533 474899

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00533 512 Gene3D Potassium Channel Kv1.1; Chain A 15 120 IPR011333 -
Cpe09g00533 512 Pfam NPH3 family 208 340 IPR027356 -
Cpe09g00533 512 Pfam NPH3 family 348 374 IPR027356 -
Cpe09g00533 512 MobiDBLite consensus disorder prediction 424 453 - -
Cpe09g00533 512 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 1 344 - -
Cpe09g00533 512 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 348 507 - -
Cpe09g00533 512 MobiDBLite consensus disorder prediction 427 453 - -
Cpe09g00533 512 ProSiteProfiles NPH3 domain profile. 207 512 IPR027356 -
Cpe09g00533 512 SUPERFAMILY POZ domain 21 115 IPR011333 -
Cpe09g00533 512 PANTHER OS12G0117600 PROTEIN 1 344 IPR043454 -
Cpe09g00533 512 PANTHER OS12G0117600 PROTEIN 348 507 IPR043454 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00533 - - - csv:101222450 616.69
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01569 Cpe09g00533 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00533 Cpe-Chr9:3579924 Cpe10g00477 Cpe-Chr10:2806995 8.54E-25 dispersed
Cpe01g01569 Cpe-Chr1:9381733 Cpe09g00533 Cpe-Chr9:3579924 1.34E-99 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g641 Blo01g00384 Blo16g01173 Bda01g02208 Bda11g01288 Bpe13g00508 . Bma14g01820 Bma15g00219 . Cmo18g00768 . Cma18g00763 . Car18g00698 . Cpe09g00533 Cpe01g01569 Bhi07g01792 . . . Hepe10g1591 . . Cla05g02588 Cam05g2777 Cec05g2813 Cco05g2849 Clacu05g2779 Cmu05g2629 Cre05g2743 Cone13ag1079 Cone19ag1066 . . Lsi04g00596 Csa05g02287 Chy10g00854 Cme10g00576 Blo06g00849 . Bda07g01637 Bda11g01288 . . . Bma06g00600 . . . Cma04g01771 . Car04g01796 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003072 5 1 3 3 4 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 2 1 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00533 Cpe_Chr09 FPKM 19.90979 22.963463 26.862249 26.430286 39.685688 37.542145 39.188679 26.403563 27.448929 29.992321