Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00538 ATGGCGAAGCCGTGGGTTCGATGTGACCTCGGAGGGACCAAATGTAACATGCTCGACACGAATATCAATGTCAACATAAGTCCACATCATGATCATGACAAGAACTCCCTTCCAAATCAAACACAAATGAATGAATTTAATATGGAAATGTGTCATTCCTTAATGTTTGCTGTCTTGGCACTGTCACTGCTTCCCTGCTCTGTTCTGGCCCGAAAGCCCTGCAATTTCCCGGCCATTATCAACTTCGGCGACTCCAATTCCGACACCGGCGGCCTCTCCGCCCTCTTATGGCAGGCCCCTCCACCCAATGGCATGTCCTATTTCCACGCCCCCGCCGGCCGGTACTGCGACGGCCGCCTCATCGTTGATTTCATGGCCAAAAGCTTTGGATTGCCTTATCTTAGCGCTTATCTCAATGCATTGGGAGCCAATTTCAGCCACGGAGCCAATTTCGCCACTGCTGCCTCAAGCATTATGCCACAAACCATACCTCTTATGCAGCCCGGTGGTGTTAGCCCCATTTCTCTTGATGTTCAATACAATGAATTCTATGACTTTCGTCGTAGATCCCAAACCGTTCGTAATCGATTTGGTGGTGTTTTTAAGCCGTTATTGCCGAAGGAAACGAGCTTCAGTCGGGCACTATACACGTTTGATATTGGTCAGAACGATTTGACGAGTGGTCCGGTGGGGTGCCTTCCATATGTATTGAGTCGAATGCCTGTTTCACCCTCCGACTATGACCAATATGGATGTGCCATTCCTTTCAATGACTTGGCTCAAACTTTCAACAGTGGCCTGAAGAAAGCTGTGGCTGAGCTTCGCGCCGCTTTGCCCGATGCAGCACTCACATACGTCGATGTTTACTCTCTCAAATACGCCCTCGTTAGCCAACACAAAAAACATGGGTTCGAGTTTCCCTTGAGAACGTGTTGTGGGCATGGTGGAAAGTACAACTTTAATGTGAAGCTTGGATGTGGAGGAACGAAACGGGTGAACGGGAAGGATGTTTTGATTGGAAAGGCTTGTAAGAAGCCAGAAGTGTACGTGAATTGGGATGGTATACATTATACGGAGGCAGCTAACAAATGGATCTTCAATCAGATCAAAACCGATGCTTATTCTGATCCACCAATTCCTTTGGAGATGGCTTTTTGCATTTTTGATCAATGCCATTCCTTAATGATTGCTGTCTTCGCACTTCTACTGGTTCCACACTCTGTCCTAGCCCGGAAGCCCTGCAATTTCCCGGCCGTTTTCAACTTCGGCGACTCCAACTCTGACACCGGCGGCCTCTCCGCCGTCTTCGGACAGGCCCCGCCGCCCAATGGCATGTCCTATTTCCATGGTCCCGCCGGCCGCTACTGCGACGGCCGCCTCGTCATTGATTTCATAGCCCAAAGCCTTGGATTACCTTATCTTAGCGCTTATCTCAATGCATTGGGAGCCAATTTCAGTCATGGAGCCAATTTTGCGACCGCTGGCTCAACTGTTAGGCCACAAAACAGGACTCTTCAGCAGAGTGGATTTAGCCCCATTTCGCTCGATGTTCAGTACAATGAATTCTATGACTTTCGTCGTAGATCTCAGACCGTTCGTAATCGACTGGGTGGGTTTTTTAAGCCATTGTTGCCTAAGGAAACGAGCTTCGGTCGGGCACTGTACACGTTTGATATTGGTCAGAACGATTTGACAAGTGGCCCGGTGGGGTGCCTTCCATATGTATTGGACCGAATGCCCGTTTCACCCTCCGACTACGACCAATATGGATGTGCCATTCCTTTCAATGACTTGGCTCAAACTTTCAACCGTGGTCTCAAGGATGCTGTGGTTAAGCTTCGCGCCGCCTTGCCTGATGCCGCCCTCACCTACGTTGATATCTACTCCCTCAAATACGACCTTGTTAGCCAACATAAAAAACATGGGTTCGAGTTTCCTTTGAGAACGTGTTGTGGGCATGGTGGAAAGTACAACTTCAATGTGAAGCTTGGATGTGCGGGAAAGAAACGGATGAATGGGAAAGATGTTTTGATTGGAAAAGCTTGCGAAAAGCCAGAAGTGTATGTGAATTGGGACGGTGTTCATTATACTCAGGCCGCTAACAAATGGATCTTCAATCAGATTAAAACGGGTGCTTATTCAGATCCACCCATCCCTTTGGAGATGGCTTGTCATAGAGCCTAA 2184 48.49 MAKPWVRCDLGGTKCNMLDTNINVNISPHHDHDKNSLPNQTQMNEFNMEMCHSLMFAVLALSLLPCSVLARKPCNFPAIINFGDSNSDTGGLSALLWQAPPPNGMSYFHAPAGRYCDGRLIVDFMAKSFGLPYLSAYLNALGANFSHGANFATAASSIMPQTIPLMQPGGVSPISLDVQYNEFYDFRRRSQTVRNRFGGVFKPLLPKETSFSRALYTFDIGQNDLTSGPVGCLPYVLSRMPVSPSDYDQYGCAIPFNDLAQTFNSGLKKAVAELRAALPDAALTYVDVYSLKYALVSQHKKHGFEFPLRTCCGHGGKYNFNVKLGCGGTKRVNGKDVLIGKACKKPEVYVNWDGIHYTEAANKWIFNQIKTDAYSDPPIPLEMAFCIFDQCHSLMIAVFALLLVPHSVLARKPCNFPAVFNFGDSNSDTGGLSAVFGQAPPPNGMSYFHGPAGRYCDGRLVIDFIAQSLGLPYLSAYLNALGANFSHGANFATAGSTVRPQNRTLQQSGFSPISLDVQYNEFYDFRRRSQTVRNRLGGFFKPLLPKETSFGRALYTFDIGQNDLTSGPVGCLPYVLDRMPVSPSDYDQYGCAIPFNDLAQTFNRGLKDAVVKLRAALPDAALTYVDIYSLKYDLVSQHKKHGFEFPLRTCCGHGGKYNFNVKLGCAGKKRMNGKDVLIGKACEKPEVYVNWDGVHYTQAANKWIFNQIKTGAYSDPPIPLEMACHRA 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3614314 3625513 - Cp4.1LG09g05420.1 Cpe09g00538 474904

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00538 727 Gene3D SGNH hydrolase 566 711 IPR036514 -
Cpe09g00538 727 Gene3D SGNH hydrolase 67 226 IPR036514 -
Cpe09g00538 727 Gene3D SGNH hydrolase 227 373 IPR036514 -
Cpe09g00538 727 Gene3D SGNH hydrolase 406 565 IPR036514 -
Cpe09g00538 727 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 228 385 - -
Cpe09g00538 727 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 72 228 - -
Cpe09g00538 727 CDD SGNH_plant_lipase_like 77 369 IPR035669 -
Cpe09g00538 727 PANTHER BNAA06G32900D PROTEIN 412 567 - -
Cpe09g00538 727 PANTHER BNAA06G32900D PROTEIN 228 385 - -
Cpe09g00538 727 PANTHER BNAA06G32900D PROTEIN 566 726 - -
Cpe09g00538 727 PANTHER BNAA06G32900D PROTEIN 72 228 - -
Cpe09g00538 727 CDD SGNH_plant_lipase_like 417 708 IPR035669 -
Cpe09g00538 727 Pfam GDSL-like Lipase/Acylhydrolase 79 227 IPR001087 GO:0016788
Cpe09g00538 727 Pfam GDSL-like Lipase/Acylhydrolase 419 566 IPR001087 GO:0016788
Cpe09g00538 727 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 412 567 - -
Cpe09g00538 727 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 566 726 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00538 - - - spen:107019256 809.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00591 Cpe-Chr3:3552353 Cpe09g00538 Cpe-Chr9:3614314 1.77E-70 dispersed
Cpe09g00538 Cpe-Chr9:3614314 Cpe11g00950 Cpe-Chr11:8040617 1.80E-08 dispersed
Cpe09g00538 Cpe-Chr9:3614314 Cpe09g00539 Cpe-Chr9:3618080 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g632 . . . . . . . Bma15g00221 . Cmo18g00764 . Cma18g00759 . Car18g00692 Sed04g0578 Cpe09g00538 . Bhi07g01798 Tan04g0156 Cmetu10g1157 . Hepe10g1584 . . Cla05g02593 Cam05g2784 Cec05g2821 . Clacu05g2786 Cmu05g2634 Cre05g2750 . . . . Lsi04g00602 . . Cme10g00583 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004340 1 1 1 0 1 1 3 1 1 1 1 1 2 1 1 3 1 4 2 1 1 1 1 1 1 1 1 1 1 6 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00538 Cpe_Chr09 FPKM 3.998237 4.736478 0.0 0.062933 5.616252 8.399624 7.264508 0.641202 2.215907 1.228421