Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00539 ATGGAGTGTCATTCCTTAATGTTTGCTGTCTTGGCACTGTCACTGACTCCATGCTCTGTCCTCGCCCCAAAGCCATGCAATTTCCCGGCCATTTTCAACTTCGGCGACTCCAATTCTGACACCGGCGGCTTCTCCGCCGTCTTTGGGCAGGCCCCTCCGCCCAATGGCATGTCCTATTTCCATGGACCCGTCGGCCGCTACTCCGACGGCCGCCTCATCGTTGATTTCATAGCTGAGAGCTTGGGATTGCCTTATCTTAGCGCGTATCTTAATGGGTTGGGAGCAAATTACACTCACGGTGCCAATTTCGCGACGGCTGCCTCAACTATTAGGCAATCAAACAAAACTCTTCGTCTCGGTGGAGTTAGTCCCATTTCTCTCGATGTTCAGTTCAATGAATTCTATGACTTTCGTCGTAGATCCCAAACCGTTCGTAATCGACTGGGTGGCATTTTTAAGCAATTATTACCAAAAAAAAGGAGTTTCAGGCGGGCGCTGTACACGTTTGATATTGGTCAAAACGATTTGACCAGTGGCTACTTTGCTAACATGAGCGTGGCGCAAGTTAGAGGCTACATCCCTCAAGTGCTGGACCAGTTCACCACCATTGTCAAGTCGGTGCACGGTCAAGGGGGAAGGTTCTTCTGGATCCATAACACCGGCCCGGTGGGGTGCCTTCCATATGTATTGGTCGGAATGCACGTTTCACCCTCCGACTACGACCAATATGGATGCGCCATTCCTTTCAATGACTTGGCTCAAGAGTTCAACCGTGGCTTGAAGGAAGCTGTGGTTGAGCTTCGTGCTGCCTTGCCTGATGCTGTCATCACTTACGTTGATATCTACTCTCTCAAATACGCCCTCGTTAGCCAACATAAGAAACATGGGTTCGAGTTTCCTTTGAGAACGTGTTGTGGACATGGTGGAAAGTATAACTTCAATTTGAAGCTTGGATGTGGAGGAACGAAACGGATCCATGGGAAGGATGTTTTGATTGGAAAGGCGTGTAAAAGACCAGGAGTGTACGTGAATTGGGATGGCGTTCATTATACTCAAGCAGCTAACAAATGGATCTTCAATCAAATTAAAACGGGTGCTTTTTCTGACCCACCGATCCCTTTGAAGATGGCTTGTCACAGAACCTAA 1146 48.52 MECHSLMFAVLALSLTPCSVLAPKPCNFPAIFNFGDSNSDTGGFSAVFGQAPPPNGMSYFHGPVGRYSDGRLIVDFIAESLGLPYLSAYLNGLGANYTHGANFATAASTIRQSNKTLRLGGVSPISLDVQFNEFYDFRRRSQTVRNRLGGIFKQLLPKKRSFRRALYTFDIGQNDLTSGYFANMSVAQVRGYIPQVLDQFTTIVKSVHGQGGRFFWIHNTGPVGCLPYVLVGMHVSPSDYDQYGCAIPFNDLAQEFNRGLKEAVVELRAALPDAVITYVDIYSLKYALVSQHKKHGFEFPLRTCCGHGGKYNFNLKLGCGGTKRIHGKDVLIGKACKRPGVYVNWDGVHYTQAANKWIFNQIKTGAFSDPPIPLKMACHRT 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3618080 3619921 + Cp4.1LG09g05340.1 Cpe09g00539 474905

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00539 381 PANTHER ESTERASE-LIKE ISOFORM X1 15 380 - -
Cpe09g00539 381 CDD SGNH_plant_lipase_like 29 362 IPR035669 -
Cpe09g00539 381 Gene3D SGNH hydrolase 20 365 IPR036514 -
Cpe09g00539 381 Pfam GDSL-like Lipase/Acylhydrolase 31 362 IPR001087 GO:0016788
Cpe09g00539 381 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 15 380 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00539 - - - bhj:120080807 657.136
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02352 Cpe-Chr1:19703847 Cpe09g00539 Cpe-Chr9:3618080 4.77E-97 dispersed
Cpe09g00539 Cpe-Chr9:3618080 Cpe12g00401 Cpe-Chr12:2890013 6.00E-97 dispersed
Cpe09g00538 Cpe-Chr9:3614314 Cpe09g00539 Cpe-Chr9:3618080 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g630 . . . . . . . . . Cmo18g00762 . Cma18g00758 . Car18g00691 . Cpe09g00539 . . . . . . . . . . . . . . . . . . . . Csa05g02281 Chy10g00847 . Blo06g00847 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004340 1 1 1 0 1 1 3 1 1 1 1 1 2 1 1 3 1 4 2 1 1 1 1 1 1 1 1 1 1 6 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00539 Cpe_Chr09 FPKM 9.851282 10.312014 0.708293 0.809803 16.810026 20.643797 17.487116 3.670831 3.063113 3.203156