Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00546 ATGGATGATGACACTGTTCCTGTGGTAGTTAAGCCCGGACACATTCGCTTTGAGCCAGTTGGAAAAGTGGCTGCGGATCAGACTGAAAAACAACCAAACCACTTGCCTTTGGAGACATTACACTGGAATGGCATAACCAACAAGAAGAAGGGTCAGAAATGGGGCAAAGAGAAAACTTCATCTTTGAATAGGAACAATTCTAACAATCATACAGACGAACCTCTTCGGTTGCCTACTACTGAAGCTGAGCAACATACAATTTCAGCACCTGTAGTCGGTCTCATAAATTTTGATGAACTTGAACCGTGCAGTGGCTTGCCTCAGAAAGGTGATGTAGTTGCATATCGTTTGATTGAGTTATCATCAACCTGGACACCTGAGATTTCCTCCTTCCGAGCTGGTAAAGTATCATGGTACGACACTGAATCCAATCGAATTATGCTAAATCCAGTTCCAGAATACCCATTACCTGTTAAAAAGGAGATGGACGAGGATTCTGCATTACACTTAGATTCAACCCCATATGGTGAAAATGGCTCTTTAAAGATAGATTTTGCCTCTCTTGTTGATCTTCGGCTTATCAGGCAAGGAAGCTTGGATTCTTCAAAAACTATGGTTAACCAGGAAAACACTTCTGCTAAACAAAGTGCAGAAAGTTCCATATTCGCCCATAGCATCGGAAATGCCAACGACACTAAACAAGGTAATGGAAAAGTAACTGCGTGGGATGAAATCAGCGAGGCTCTGAGTGCAAAGAAAGCTGAACTTACTAAGAATGATGGTTGGAATCGAGAAGAAAGTTCAGGAAGGAGGCCAGATGGTAGGAATCAAGAAGAAAGTTCAGGAAAAAGGTCAAGGTCCTGTAGGGCACTCAGAGGCAGCGCCCTTGGTCCAATAGTGGCTCTATTAAGAGCTCGTAATGAAATCTAA 930 42.8 MDDDTVPVVVKPGHIRFEPVGKVAADQTEKQPNHLPLETLHWNGITNKKKGQKWGKEKTSSLNRNNSNNHTDEPLRLPTTEAEQHTISAPVVGLINFDELEPCSGLPQKGDVVAYRLIELSSTWTPEISSFRAGKVSWYDTESNRIMLNPVPEYPLPVKKEMDEDSALHLDSTPYGENGSLKIDFASLVDLRLIRQGSLDSSKTMVNQENTSAKQSAESSIFAHSIGNANDTKQGNGKVTAWDEISEALSAKKAELTKNDGWNREESSGRRPDGRNQEESSGKRSRSCRALRGSALGPIVALLRARNEI 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3667989 3672706 + Cp4.1LG09g06320.1 Cpe09g00546 474912

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00546 309 MobiDBLite consensus disorder prediction 254 286 - -
Cpe09g00546 309 MobiDBLite consensus disorder prediction 46 77 - -
Cpe09g00546 309 PANTHER COILIN P80 2 309 IPR024822 -
Cpe09g00546 309 PANTHER COILIN 2 309 - -
Cpe09g00546 309 MobiDBLite consensus disorder prediction 254 290 - -
Cpe09g00546 309 MobiDBLite consensus disorder prediction 58 77 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00546 K13150 COIL, CLN80; coilin - csv:101214537 429.869
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01574 Cpe09g00546 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00546 Cpe-Chr9:3667989 Cpe11g00038 Cpe-Chr11:193834 1.78E-52 dispersed
Cpe09g00546 Cpe-Chr9:3667989 Cpe01g01574 Cpe-Chr1:9425099 7.39E-158 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g622 . . . . . . . Bma15g00225 . Cmo18g00758 . Cma18g00754 . Car18g00687 Sed06g1696 Cpe09g00546 Cpe01g01574 Bhi07g01803 Tan04g0152 Cmetu10g1657 . Hepe10g0055 . . Cla05g02596 Cam05g2787 Cec05g2825 Cco05g2857 Clacu05g2789 Cmu05g2637 Cre05g2753 Cone13ag1090 Cone19ag1079 . Cone12ag0681 Lsi04g00605 Csa05g02279 Chy10g00845 Cme10g00585 Blo06g00843 . . . . . . . . . . Cma04g01777 Cma05g00049 Car04g01802 Car05g00038 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005023 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 3 1 2 1 1 1 1 1 1 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00546 Cpe_Chr09 FPKM 32.140034 37.370125 63.453606 65.673592 39.578575 32.420528 38.266766 56.806187 52.946583 56.210487