Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00547 ATGGATGAAAAGAGGGTGGCTGGTTGTACTCGTAACGCATTTTTCCGGTCGGTTTCGTGGTCGGAACGGTCACCGTCGAAGCCCCGTGATAATCGGAGCTTAGTGTCGAATAGTAATAAAGCTCGGTTATGTTTGCCGCCGCTGCAGCCGCTTTCGATCAGTCGCCGGAGTGTTGAGGAGTGGCCACCGGCGGGTTGTGATGATCTTGGTGTTTGGCCAAACCCAGAAACTCCGAGAGAGGTTGTTGATGATAAGCCTGTGAGGGAATTTGAGTTTAAGAAGGATAAACTTGCGTTTTTTGATAAGAAATGCTCGAAAATTCTTGATCATGTGTATTTAGGTAGTGATTCTGTGGCTAAGAATCGAGAGGTTTTGAGGCAGAATGGGATCACTCATGTGTTGAATTGTGTTGGGTTTGTGTGTCCTGAGTATTTCAAGGGTGAATTTGTTTACAAAACTCTTTGGCTGCAAGATACTCCTTCAGAGGATATCACTAGCATTCTCTATGATGTTTTTGATTACTTTGAAGATGTTTGTGAGCTCGGTGGTCGGGTTTTCGTGCATTGTTTTCAAGGAGTGTCTCGGTCGACTTCTCTTGTAATAGCATACCTTATGTGGAAGGAAGGTCGGAGCTTTCAGGACGCTTTTCAATCGGTAAAGGCCGCTCGAGGGGTGGCTAATCCGAACTTGGGGTTTGCTTGTCAATTATTGCAGTGCCAGAAGCGGGTTCATGCCCTGCCTGCTAGCCCGGATTCGACTTTGAGGATGTATAGGATGGCTCCTCATTCATCTTATGATCCACTTCATCTTGTACCTAAGATGTTGAACACTCCGACTGTCCAAGGGCTTGATTCTCGTGGGGCATTTGTCGTGCACGTTCCTCCGGCTATCTATGTCTGGGAAGGGGAGAAGTGTGACTCTGTGATGTTGAACTCGGCTAAGGCAGCAGCGTCGCAGATCATTCGATACGAAAAGGCAAGAGGCCCTATCCTTAGCATCAAAGAAGGTGATGAACCATTGGGATTTTGGAAAGCTTTGATGGATGGCCAAAATTTGGCTGATAATTCCAAAGGGCAAGTTCGGAAGGTTGAGGAGTATAATCCAGATTTCGAAATTTTTCACAGGGCGATTTCGGATGGGGTTGTTCCACCTTTCGATATATCTAATACCGATTCGGAAAATTACCTTCCCGTTAGAGAAAATGGGTGGGACACGACCAAAAGGAAGATCGAAAACGAAACTACAGAAGATATTGTGACATCCTTTTCAGAATTGGATTGTGATACTAAAGGAGCATTTGATGATATGGACATGATGACTGCAAATATTGATGAAGATCCAAATGCACCTGTTTCTTCAATTGACCTTGCATCTCCACCACTTTCACCCACAGCCTATTTGTGTGACTCACCTGAATCTTTTGACTGTTTTCCAGCTCGTAACTTGGATCAGGAAATAGAAGATTCTAAGGTGAGCTCGATCCCAGACGATCCTTTATCGTTACCGATTCATCCTCTGGGATCACCCGATTCATTTTCGAGTTTTCAAGGAGGGACAAGTCCAAAGTTCGGCACCAAATCCCCTTCACTCTCTCCTTCTACATCTGATAACTCGAGTTCATTTACCTTTTCACCATCATCGTCTAATTGGTCCGACTTATCGTATATGTCTTCTCGGCAACCATCACCGTCCGACATGGATTCAGTACATCCAGCTGTTAAAAACTCTTCCATCATAGATAATTTTTGTTTACACCACAAAGAAACTCATCCTATCTTTGTAGAGTCCTTTCCCTCTTACCCCTTGTTAAGGGCAGGAAACACGAATTTGACATCAAGAGGAGCCTCCCCTTCAATTGCAGAGCGTCGAGGGAGTCATCCTCCACCTGGGATGTTGCTGCCCTCCATTGAAGAAGCCTGCAAGGTTCAGAGGAAAATAGTTCGGTCATCATCGTTTTCTTTGCTCAACTTAGACAACGATGCATTGGAGATAGCTGGGTGCAGCCAATCCAAGAATAAAAGCAGTAGTAAAGATATAAATTTGGACATTGATAGATTTGGGGCTTGCACTGAATTAGAATACAAGTTTGCAGAAGCAGAAACTCCAATTTTTTACCAGTGGCCTTCAATGAATACAGTGGAGATCAATCAATTCGGGAATCTCAATTCTAGATCAGTGTATATATTGTTTGCACCAGATACAAATTTGGATTCAAACGGCTACAACAACTTATTTATCTGGCTGGGGAGTGAAGTTTTGCATAAAGACGATGACGGTCAACTAATGAGTGACGACAATGAAGATGGACATCTTCACTGGGAGATGATCGGACGTATATTCATTAACAATAAGGGAATTCCTAGAGATACGAAAATACAGATAATAAGAGAAGGTGAGGAGCCCGAGAAGTTCCTTGCACATATAAGCAATTCATTACCTCAAAAAACAGAATGTGTTGATCTGTGGTCGGTGAAGACTTGA 2481 43.73 MDEKRVAGCTRNAFFRSVSWSERSPSKPRDNRSLVSNSNKARLCLPPLQPLSISRRSVEEWPPAGCDDLGVWPNPETPREVVDDKPVREFEFKKDKLAFFDKKCSKILDHVYLGSDSVAKNREVLRQNGITHVLNCVGFVCPEYFKGEFVYKTLWLQDTPSEDITSILYDVFDYFEDVCELGGRVFVHCFQGVSRSTSLVIAYLMWKEGRSFQDAFQSVKAARGVANPNLGFACQLLQCQKRVHALPASPDSTLRMYRMAPHSSYDPLHLVPKMLNTPTVQGLDSRGAFVVHVPPAIYVWEGEKCDSVMLNSAKAAASQIIRYEKARGPILSIKEGDEPLGFWKALMDGQNLADNSKGQVRKVEEYNPDFEIFHRAISDGVVPPFDISNTDSENYLPVRENGWDTTKRKIENETTEDIVTSFSELDCDTKGAFDDMDMMTANIDEDPNAPVSSIDLASPPLSPTAYLCDSPESFDCFPARNLDQEIEDSKVSSIPDDPLSLPIHPLGSPDSFSSFQGGTSPKFGTKSPSLSPSTSDNSSSFTFSPSSSNWSDLSYMSSRQPSPSDMDSVHPAVKNSSIIDNFCLHHKETHPIFVESFPSYPLLRAGNTNLTSRGASPSIAERRGSHPPPGMLLPSIEEACKVQRKIVRSSSFSLLNLDNDALEIAGCSQSKNKSSSKDINLDIDRFGACTELEYKFAEAETPIFYQWPSMNTVEINQFGNLNSRSVYILFAPDTNLDSNGYNNLFIWLGSEVLHKDDDGQLMSDDNEDGHLHWEMIGRIFINNKGIPRDTKIQIIREGEEPEKFLAHISNSLPQKTECVDLWSVKT 826
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3670758 3675074 - Cp4.1LG09g06310.1 Cpe09g00547 474913

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00547 826 PANTHER MKPA PROTEIN 12 805 - -
Cpe09g00547 826 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 98 244 IPR029021 -
Cpe09g00547 826 Gene3D Protein tyrosine phosphatase superfamily 80 245 IPR029021 -
Cpe09g00547 826 ProSitePatterns Tyrosine specific protein phosphatases active site. 187 197 IPR016130 GO:0016311|GO:0016791
Cpe09g00547 826 CDD DSP 104 238 - -
Cpe09g00547 826 Gene3D Severin 254 354 IPR029006 -
Cpe09g00547 826 Gene3D Severin 705 808 IPR029006 -
Cpe09g00547 826 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 162 223 IPR000387 GO:0016311|GO:0016791
Cpe09g00547 826 Pfam Dual specificity phosphatase, catalytic domain 111 241 IPR000340 GO:0008138|GO:0016311
Cpe09g00547 826 MobiDBLite consensus disorder prediction 507 571 - -
Cpe09g00547 826 ProSiteProfiles Dual specificity protein phosphatase domain profile. 103 245 IPR020422 GO:0006470|GO:0008138
Cpe09g00547 826 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 12 805 - -
Cpe09g00547 826 MobiDBLite consensus disorder prediction 488 571 - -
Cpe09g00547 826 SMART dsp_5 103 242 IPR020422 GO:0006470|GO:0008138
Cpe09g00547 826 SUPERFAMILY Actin depolymerizing proteins 707 813 - -
Cpe09g00547 826 SUPERFAMILY Actin depolymerizing proteins 250 349 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00547 - - - csv:101203370 1299.26
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01575 Cpe09g00547 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00547 Cpe-Chr9:3670758 Cpe18g00937 Cpe-Chr18:8248876 2.06E-19 dispersed
Cpe01g01575 Cpe-Chr1:9430635 Cpe09g00547 Cpe-Chr9:3670758 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g621 . . . . . . . Bma15g00226 . Cmo18g00757 . Cma18g00752 . Car18g00686 . Cpe09g00547 Cpe01g01575 Bhi07g01805 . . . . . . Cla05g02597 Cam05g2788 Cec05g2826 Cco05g2858 Clacu05g2790 Cmu05g2638 Cre05g2754 Cone13ag1091 Cone19ag1080 Cone8ag0701 Cone12ag0682 Lsi04g00606 Csa05g02278 Chy10g00844 Cme10g00586 . . . . . . . . . . . Cma04g01778 . Car04g01803 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007047 1 3 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00547 Cpe_Chr09 FPKM 26.919094 22.284273 4.69417 5.597373 3.172152 0.732212 2.28537 20.516361 23.080248 23.126837