Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00548 CTTCCCAAAGCTGCTACTCCGCCATCGCCAGGTTCCTTCGCCATCGTTCAACTGAGCGTTCATCTCTCTTTCACTGAACGGTCAAACAGTTTCGAGCATCTGCAAATTCGGCTCCAATGGATTCTTCATTGTCTTGCTTTAGCATTCCGACCGACATGCATTGATATGTATCACAGCGTAAACCGCCTCGTCTTTCGAGCTAGTATCACCAAGTGTGTCAAGGTTGGTTTAATTGATGAAGCTATCAGGATATTCGATGAAATGACTCAATCGACTTGTCCTGTAACGAGCAGAGACTACAATCGCTTTATTGGTGTTCTGATTAGCCGCTCGCGTTTCGATTTGGCCGAAAGTTATTACTCGAGAATGATACCTCAAGGTTTTTCTCTTACGCCATTTACTTACTCCAGGTTCATTTCTGCTTTGTGTGAAGTTAAGAATTTCGGTCTCATAGCTAGGCTGTTAGAAGATATGAATAGGCTTGGCTATATTCCTGACATTTGGGCTTTTAATATATATTTGAATCTCTTATTCCGTGAAAACTTTTTAGAATTGGCTTTAGAGTTTTTTAACGAAATGGTTTCGAAAGGAAGGGAACCTGATGTTGTAACATACACCATAATAGTTGATAGATTGTGCAAAGCCAAGCAATATGGCCAAGCTGTGGAGTTTTGGCATTTTATGGTTCAGAAGGGGATTAGTCCAGACATGAAAGCCTGTACGGCTCTTGTTGTTGGGCTCTGCGATGGTGGGAAAGTTGATTTAGCATATGAGCTTATGGTTGGTAAAATGAAGGGTCAGACGAAGTTCAACAACTTGATTTATAATTCTCTGATGAGTGGGTTTTGTAAAGCTGGCCGGATCTCTAAGGCACTGGCCATCAAGTCATTTATGAGTAAGAATGGTTGTGAGCCAGATTTGGTTACCTACAATATTTTGCTGAATTTTTTTTGCGATGGGCTTATGTTGGAGGATGCAGGGGAGTCGATGAAGAAGATGGAGAGGATAGGAATGGAGCCTGATGTGTACAGTTATAATCAACTTCTTAAGGGTCTTTGCAAGGCTAATCGGCTGGATAAAGCATATAGATTGATGAATAAAATGTGGGAGAAAGGGTTGTGTGACACTGTTTCGTACAACACTTTGATAAGTACACTATGCAAAGCATTGGCAACTAGAAAGGCATACAAGCTATTTGAGGAAATGGGCCAGAAAGGTGTTGCTCCAGATGTGGGAACATTTGCAACTCTTATAAAAGCTTTTCTTAGAGAAGGAAGCTCCCATATAGCAAAGAGACTTCTTCATAAGATGACCGAGACAATTCTGTTACCTGATCACATATTTTATACAACGGTCATAGATTACCTTTGTAAGACGGGGAAGATTGAGATGGCTCAAGGCGTCTTTCATGACATGATAGAGATAGGAATCTCCCCTGATGTGGTCTCATATAATGCTCTTATAAATGGGCTTTGCAAGGCCTTTAAAGTTCATGAGGCCATGTTACTGTATGAAGAAATGCAAATGAGAGGATGCTGTCCTGACGAGGTAACTTTCAAACTGATAATTGGAGGACTTTTACGAGAAAAGAATCTTCCTTTGGCTTGTCAGGTCTGGGATCAGATGATGGAGAAGGGCTATACGCTTGACAGATTTCTATCCGAGGCTCTTATCAAGGCCATTCAGTCGAGGGATGCTGATATAAATCACATTTTGATACGACTGTTCATCCGTGGGATCCCTGGAAGATCCTTTGGCAATTGCGAGGCTTGGACCAGCTCTTTGACTTCTCGTGCTCCATTCCGTGTTTGCATACATATACATCCATCTAATCCATTGGAGTTTTCAAGAGGGATTTGGACTAGGAAGCCCTGCTTAGCATCGAAAACTACCGGGATCGAGGATTGTATTTCTCATCACATTGATGGCATAAGAACAATGGCGGTGCAGTTGTGA 1956 41.87 LPKAATPPSPGSFAIVQLSVHLSFTERSNSFEHLQIRLQWILHCLALAFRPTCIDMYHSVNRLVFRASITKCVKVGLIDEAIRIFDEMTQSTCPVTSRDYNRFIGVLISRSRFDLAESYYSRMIPQGFSLTPFTYSRFISALCEVKNFGLIARLLEDMNRLGYIPDIWAFNIYLNLLFRENFLELALEFFNEMVSKGREPDVVTYTIIVDRLCKAKQYGQAVEFWHFMVQKGISPDMKACTALVVGLCDGGKVDLAYELMVGKMKGQTKFNNLIYNSLMSGFCKAGRISKALAIKSFMSKNGCEPDLVTYNILLNFFCDGLMLEDAGESMKKMERIGMEPDVYSYNQLLKGLCKANRLDKAYRLMNKMWEKGLCDTVSYNTLISTLCKALATRKAYKLFEEMGQKGVAPDVGTFATLIKAFLREGSSHIAKRLLHKMTETILLPDHIFYTTVIDYLCKTGKIEMAQGVFHDMIEIGISPDVVSYNALINGLCKAFKVHEAMLLYEEMQMRGCCPDEVTFKLIIGGLLREKNLPLACQVWDQMMEKGYTLDRFLSEALIKAIQSRDADINHILIRLFIRGIPGRSFGNCEAWTSSLTSRAPFRVCIHIHPSNPLEFSRGIWTRKPCLASKTTGIEDCISHHIDGIRTMAVQL 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3677564 3682207 + Cp4.1LG09g06340.1 Cpe09g00548 474914

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00548 651 Gene3D Tetratricopeptide repeat domain 442 572 IPR011990 GO:0005515
Cpe09g00548 651 Gene3D Tetratricopeptide repeat domain 263 373 IPR011990 GO:0005515
Cpe09g00548 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 480 514 IPR002885 -
Cpe09g00548 651 Gene3D Tetratricopeptide repeat domain 124 194 IPR011990 GO:0005515
Cpe09g00548 651 Gene3D Tetratricopeptide repeat domain 53 123 IPR011990 GO:0005515
Cpe09g00548 651 Gene3D Tetratricopeptide repeat domain 195 262 IPR011990 GO:0005515
Cpe09g00548 651 Gene3D Tetratricopeptide repeat domain 374 441 IPR011990 GO:0005515
Cpe09g00548 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 166 200 IPR002885 -
Cpe09g00548 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Cpe09g00548 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 409 IPR002885 -
Cpe09g00548 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 515 549 IPR002885 -
Cpe09g00548 651 Pfam PPR repeat 337 368 IPR002885 -
Cpe09g00548 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 445 479 IPR002885 -
Cpe09g00548 651 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 59 566 - -
Cpe09g00548 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Cpe09g00548 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 61 95 IPR002885 -
Cpe09g00548 651 Pfam PPR repeat 449 477 IPR002885 -
Cpe09g00548 651 Pfam PPR repeat 69 91 IPR002885 -
Cpe09g00548 651 Pfam PPR repeat family 375 422 IPR002885 -
Cpe09g00548 651 Pfam PPR repeat family 479 527 IPR002885 -
Cpe09g00548 651 Pfam PPR repeat family 165 214 IPR002885 -
Cpe09g00548 651 Pfam PPR repeat family 274 318 IPR002885 -
Cpe09g00548 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 201 235 IPR002885 -
Cpe09g00548 651 TIGRFAM PPR: pentatricopeptide repeat domain 517 550 IPR002885 -
Cpe09g00548 651 TIGRFAM PPR: pentatricopeptide repeat domain 169 202 IPR002885 -
Cpe09g00548 651 TIGRFAM PPR: pentatricopeptide repeat domain 449 481 IPR002885 -
Cpe09g00548 651 TIGRFAM PPR: pentatricopeptide repeat domain 377 411 IPR002885 -
Cpe09g00548 651 TIGRFAM PPR: pentatricopeptide repeat domain 482 516 IPR002885 -
Cpe09g00548 651 TIGRFAM PPR: pentatricopeptide repeat domain 203 236 IPR002885 -
Cpe09g00548 651 TIGRFAM PPR: pentatricopeptide repeat domain 343 373 IPR002885 -
Cpe09g00548 651 TIGRFAM PPR: pentatricopeptide repeat domain 274 306 IPR002885 -
Cpe09g00548 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 131 165 IPR002885 -
Cpe09g00548 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 371 IPR002885 -
Cpe09g00548 651 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 59 566 - -
Cpe09g00548 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 410 444 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00548 - - - cmax:111466483 1028.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00548 Cpe-Chr9:3677564 Cpe04g00896 Cpe-Chr4:8182850 1.14E-48 dispersed
Cpe09g00548 Cpe-Chr9:3677564 Cpe13g00449 Cpe-Chr13:4815540 4.07E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g620 . . . . . . Bma14g01828 . . Cmo18g00756 . Cma18g00751 . Car18g00685 . Cpe09g00548 . Bhi07g01807 . . . . . . Cla05g02598 Cam05g2789 Cec05g2827 Cco05g2859 Clacu05g2791 Cmu05g2639 Cre05g2755 Cone13ag1092 . . . Lsi04g00608 Csa05g02277 Chy10g00843 Cme10g00587 . . Bda07g01644 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006460 1 3 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 0 1 1 1 1 1 1 1 1 0 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00548 Cpe_Chr09 FPKM 4.993454 6.398857 150.517746 150.501709 38.62566 37.66383 36.478439 8.60006 8.442685 8.064169