Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00559 ATGTCTTTGTTCTATGTGTTCTTGAAATCTCAGCCATTTCTATCAAGTTTGGGCACTGCAGAGCCTTTGGCAGTGCCCATGGATGCCACGACAAGCGAAACGGCGCCTATACAATTCTGTAGCATTCCCGATCAATCGGTTTCGAGTATCGTTACCAATCCAGCAGCGTCGACATTTCCTTTATCGAAACGCCATTGCTTTGGGGAGTCCTGTCCGGGTGAATTCCCCTTAGCTGCTAATCCTTCTATTGTTCTTCATGTCTTGACAGCATGTAACTTGGATCCGAAAGACCTTGCGAAGTTAGAGGCAGGTTCTTACGCGACGTGTTCGTTCTTTAGACAGCCTGCGAATTTCGCTCCTGATTATGAATTATCGATTTCGGAACTTGCTGCGTTGGATATGTGTCGAAAGAGAGCTATATTTAAACCTATGACAACAGAGCAGCAGCAAGGTTTGAAGCAAAGATGTGGTGGTTCATGGAAACTGGCATTGAGGTTTTTACTGGCTGGAGAAGCTTGTTGCAGAAGGGAGAAATTCCTGGCGATAGCTGGACCCGGTCATAGCATCGTGGTTACGTCGAAAGGAGCTGTTTACTCGTTTGGTTCCAACAGCTCAGGACAGCTTGGACATGGTACGACCGAAGAAGAATCCCGACCTCCTCGCCTAATCAGGTTGCGAAATTCCCAACAAATCTTTCACCTGATACAAAGAGACATACATAGTATAAACATTAATGGACTCCGTGTTGTCGTGTTGGCGTGTTGTTGCAGATCCCTGCAAGGAATTCGAATAATTCAGGCAGCAGCAGGGTCCGGGAGGACAATGTTAATAAGCGACGCCGGGCGTGTTTATGCATTTGGCAAGGACTCATTTGGTGAAGCTGAGTATGGAGGTCAAGGAGGTCAAGGAGGTCAAGTCGTTACGACACCGAAGTTGGTCGAATCGCTTAAGGATATATTTGTGGTGCAAGCTGCAATTGGCAATTTCTTCACTGCTGTACTATCAAGAGAAGGTAGAGTGTATACATTTTCTTGGGGAAGTGAGAGTAGGCTCGGTCATCAAACCGAACCGAACGACTTGGAACCACGGGCATTGACGGGAGCCTTAGAGAACGCTCCCGTTGTTCAAATTGCTGCTGGATATTGCTATCTTCTTGCTCTAGCTTGTCATCCTAATGGCATGTCAGTGTACTCTGTAGGGTGTGGACTAGGTGGGAAGCTCGGTCACGGTTCAAGAACAGACGAGAAACACGCACGACTCATCGAACAATTTCAGCTTCTGAATCTTCAGCCAGTCGTGGTCGCTGCTGGTGCTTGGCACGCAGCCATTGTAGGTCAGGACGGTCGAGTTTGTACGTGGGGTTGGGGTCGTTACGGGTGCCTGGGTCATGGAAATGAGGAGTGTGAATCTTCTCCCAAAGTTGTGGAAGCATTAAGCAATGTCAAAGCAGTTCATGTTGCTACAGGAGATTACACAACCTTTGTAGTATCGGACGATGGCGACGTGTATTCTTTCGGTTGCGGAGAATCCGCTAGTCTGGGGCATAACAATGGCGTCGCCGCCGCCGCCGCCGCCCATGGAGAGGTCTCCCTTTCTCCTTGCTCTTACTGTCTTCTTTACTTATACTAA 1629 48.25 MSLFYVFLKSQPFLSSLGTAEPLAVPMDATTSETAPIQFCSIPDQSVSSIVTNPAASTFPLSKRHCFGESCPGEFPLAANPSIVLHVLTACNLDPKDLAKLEAGSYATCSFFRQPANFAPDYELSISELAALDMCRKRAIFKPMTTEQQQGLKQRCGGSWKLALRFLLAGEACCRREKFLAIAGPGHSIVVTSKGAVYSFGSNSSGQLGHGTTEEESRPPRLIRLRNSQQIFHLIQRDIHSININGLRVVVLACCCRSLQGIRIIQAAAGSGRTMLISDAGRVYAFGKDSFGEAEYGGQGGQGGQVVTTPKLVESLKDIFVVQAAIGNFFTAVLSREGRVYTFSWGSESRLGHQTEPNDLEPRALTGALENAPVVQIAAGYCYLLALACHPNGMSVYSVGCGLGGKLGHGSRTDEKHARLIEQFQLLNLQPVVVAAGAWHAAIVGQDGRVCTWGWGRYGCLGHGNEECESSPKVVEALSNVKAVHVATGDYTTFVVSDDGDVYSFGCGESASLGHNNGVAAAAAAHGEVSLSPCSYCLLYLY 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3867260 3869958 - Cp4.1LG09g06230.1 Cpe09g00559 474925

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00559 542 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 448 499 IPR000408 -
Cpe09g00559 542 PRINTS Chromosome condensation regulator RCC1 signature 495 516 IPR000408 -
Cpe09g00559 542 PRINTS Chromosome condensation regulator RCC1 signature 437 455 IPR000408 -
Cpe09g00559 542 PRINTS Chromosome condensation regulator RCC1 signature 324 340 IPR000408 -
Cpe09g00559 542 PRINTS Chromosome condensation regulator RCC1 signature 197 213 IPR000408 -
Cpe09g00559 542 PRINTS Chromosome condensation regulator RCC1 signature 340 354 IPR000408 -
Cpe09g00559 542 Pfam Regulator of chromosome condensation (RCC1) repeat 447 496 IPR000408 -
Cpe09g00559 542 Pfam Regulator of chromosome condensation (RCC1) repeat 194 229 IPR000408 -
Cpe09g00559 542 Pfam Regulator of chromosome condensation (RCC1) repeat 337 386 IPR000408 -
Cpe09g00559 542 Pfam Regulator of chromosome condensation (RCC1) repeat 281 334 IPR000408 -
Cpe09g00559 542 Gene3D - 180 389 IPR009091 -
Cpe09g00559 542 Gene3D - 390 531 IPR009091 -
Cpe09g00559 542 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 394 447 IPR000408 -
Cpe09g00559 542 SUPERFAMILY RCC1/BLIP-II 182 517 IPR009091 -
Cpe09g00559 542 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 256 523 - -
Cpe09g00559 542 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 195 247 IPR000408 -
Cpe09g00559 542 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 338 390 IPR000408 -
Cpe09g00559 542 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 281 337 IPR000408 -
Cpe09g00559 542 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 27 225 - -
Cpe09g00559 542 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 27 225 - -
Cpe09g00559 542 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 256 523 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00559 - - - cmos:111449612 884.789
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01582 Cpe09g00559 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00708 Cpe-Chr2:4473847 Cpe09g00559 Cpe-Chr9:3867260 6.46E-08 dispersed
Cpe06g00700 Cpe-Chr6:4349341 Cpe09g00559 Cpe-Chr9:3867260 6.93E-13 dispersed
Cpe09g00559 Cpe-Chr9:3867260 Cpe19g00104 Cpe-Chr19:824257 1.09E-21 dispersed
Cpe01g01582 Cpe-Chr1:9676087 Cpe09g00559 Cpe-Chr9:3867260 2.68E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g590 . Blo16g01178 . Bda11g01299 Bpe13g01493 . Bma14g01836 . . Cmo18g00716 . Cma18g00729 . Car18g00678 Sed06g1714 Cpe09g00559 Cpe01g01582 Bhi07g01841 Tan04g0127 Cmetu10g0484 Lac13g0111 Hepe10g1560 . . Cla05g02623 Cam05g2811 Cec05g2847 Cco05g2878 Clacu05g2815 Cmu05g2663 Cre05g2779 Cone13ag1098 . . . Lsi04g00635 Csa05g02252 Chy10g00821 Cme10g00610 . Blo11g01031 Bda07g01651 Bda11g01299 . . . Bma06g00592 . . . Cma04g01795 . Car04g01809 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004026 2 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 4 1 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00559 Cpe_Chr09 FPKM 5.130895 4.520023 6.687743 5.725295 7.577044 8.945984 10.15863 9.965288 8.560295 9.117206