Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00569 ATGGATTTTGCTTCTGTAATCGTAAATGCTGTGTTTATTTTTGCATTTTCGATATGGGTTTTGGTTCATTTTCGATGTGGAAACCCTCGATTGAGAAACACAGCGGCTCGAGGATCTAAATGGCTGATCAGAATCACGATCTTTTCTAATGCTGTTCTTCCGTTCTTGTATTGTGGTTTTGCTGTTTATGAATATTTGAATAGCAAATTTGTTTGTTGGGAATTGGCCGTTTCTGCTTTAACTTGGAGTTTGGCTGCTGCTATTGCTATCTACTGGAGAAATGATGTGTATCATGAAGGCAAACCATGGCCTATGATTCTAATTGTTTGGTGGGTTTTCTCTTGTTTTTATGGTTTAGGTTGTTTGATTCTTTTCCTGCTTACCCACTTGAAATCCATGGAAATCCCTCGTTTTCTTCCAAAACCCACCATTGTAGACTGTGCTTCCTTCACTTTGTGTTTGATAATCTGTTGTACTGCACTGACTGTTAGCTATTCCAAGAACCACAATGATCTTGAGAAGCTATTGCTTCAAACAGAGAATGTTTGTTCTTCTGAAGATCATGGTGGTTTTGTGAGTCCTGGATTGTGGAGTCAAATTACATTCCAATGGATGAATCCTCTGTTCAAAAAGGGAAGGGTTCAAAAACTTGAATTAGCTCATGTTCCTTGTGTTCCTCAATCTGAAACAGCCGAGTATGCTTCCATGTTGCTCGAAGAATCGATTGAGAGAACGAAAATCGAATCGTCTTCCTTGCCTAAAGCTATTGTTCTAGCTACATGGAAGCCCCTGGTCTTAACAGCAATCTTTGCAGGTGTCAACACATTAGCATCGTTTATGGGGCCTGTTCTAATCACCAATTTTGTGAACTATCTATTGCGAAAGGACGATGACTCGAGCAACCGTGACGGGTTGATTCTTGCGTTCTTCTTCTTTTTCGCCAAGACATTGGAGTCTCTTACTCAAAGACAGTGCTATTTCGGCACTCACCGTCTCGGTATACAGATAAGAGCAGCTCTTACAGTGATGATTTACAAGAAATGTGTTTCTATAAATGCTGCTGGTCCAAGTAATGGTAAAATAACAAATTTGATTAATGTAGATGTTGAAAGAATTGGGGACTTCTCTTGGTATATTCACAAAATTTGGTTGCTTCCTGTTCAAGTAGTTCTAGCTCTTGTTATCCTTTATATGAATCTTGGACTTGCTCCTTCCATTACTGCTCTCTTAGCCATAGTATTCATAATGGTGGGCAATACGCCTTTGGCGAGTATTCAAGAAAGTCTACACTCGAAGATAATGGATGCGAAAGATTCCCGGATCAAATTGACCTCAGAGACTCTAAGAAACATGAGAGTCTTGAAACTGCATTCTTGGGAACAGACGTTTTTGAAGAAGATCTTGAAACTTAGAGACGTTGAGAGAGGCTGGTTGAAGAGATACCTCTATACATGCTCGGTTATAGCAGTTCTCTTTTGGGTGTCACCAACTTTAGTTTCAGTAGTCACTTTTGGTGCTTGTGTTTTGATGAATGTCTCTCTAACAGCAGGCACAGTGTTATCAGCCATAGCTACTTTTCGGATCTTACAAGAACCGATTTATAATCTACCCGAGCTAGTTTCCATGATTGCTCAAACGAAAGTTTCCCTCGACCGTATTGACGAGTTCATTCGAGAAGAAGATCAAAGGAAACAGATTTATTATCCTCCATCTAGTTCATCAGACATTATGGTTGAAATAGAGGTGGGAGAGTATTCATGGGATGCCAGTGATCGAAACGTTAAACCGACGATAACCGTTGCAGAGAAGATGCAAATACCAAAGGGTTACAAGGTTGCAGTTTGTGGATCGGTCGGTTCAGGAAAATCGAGCTTACTTTGTAGCCTACTAGGCGAGATTCCACAGATTTCAGGAACACAAATGAAGGTACATGGAACTAAAGCTTATGTTCCCCAAACTGCTTGGATTCAATCAGGCACGGTTCGAGAGAATGTGCTCTTTGGGAAGGAAATTGATGAACGTTTTTATGGGGATGTGTTAGAAGGCTGTGCTTTGGACCAGGATATCAAGCTGTGGCTGGATGGAGATTGTACTTTATTGGGAGAGAGGGGGCTGAACTTAAGTGGAGGCCAAAAGCAGAGAGTTCAATTGGCAAGGGCTGTCTATAGTGATGCTGATGTTTACTTCCTGGACGATCCGTTTAGCGCCGTGGACGCTTGTACTGGAACACATTTGTTCGAGGCAAGCGCCATCTTTCTGTGTTTTCTTGTTGTGATGAAGAATGGTCATGTTGTTCAATCAGGAAAGTATGCAGAATTGATATCAGACTCAAATGGTGAGCTTGCTAGGCACATTGCAGCACACAGAAAGTCATTGAATGGAGTTGAACCATTCAAAGAGGATAAACCTCATCTTAAACCATGTCAGATGGAAGCTCAAGATGAAAATTCTTCCCTGACCCTTGGAAATGGAGACCTTATGAGGACTCAAGAAGAGGAATCTCAAACAGGTCGTGTAAAGTGGAGCGTATACTCGACCTTCATTACATCGGCTTATAAAGGAACTCTTGTTCCTGTTGTCCTTCTATGTCAAGTTTTCTTTCAAATTCTTCAGATGGGTAGCAATTACTGGATTTCTTGGGCAACAGAAGAAGAAGGCAAGGTCAGCAGAGAGCAACTGATAGGGATCTTCGTTTTGATGTCGGGTGTGAGCTCCGTCTTTATATTAGGCCGGGCCATCGTGATGGCAACCATTGCTATTGAGACTGCACAACGGATGTTTCTTGGAATGGTGACATCAATTTTTGCTGCACCTATTTCTTTCTTTGATGTCAAACCTTCAAGCCAAATCCTTAACAGATCATCTAATGATCAAAGCACTTTGGATACAGATATCCCTTATAGATTAGGGGGATTGGCCTTTGCACTAATTCAGCTGTTGAGTATCATTATCTTGATGTCCAAGGTTGCATGGCATGTTTTCCCCCTCTTCCTTGTCGTCCTCGCTATTTCTATATGGTATCAGGGATACTACATCAGTACAGCTAGAGAATTAGCTAGAATGGTTGGGATTCGAAAAGCTCCAATTCTTCATCACTTTTCTGAAACAGTTATAGGTGCAACTATCATTCGTTGTTTCAATCAAGAAGATCGTTTCTTAACGAAAATACTCGAACTAGTTGATGATCATTCTCGTATCGTTTTCCACAACTCAACTTCAATGGAATGGTTATGCCTCCGGATCAATTTTCTTTTCGACGCAGTCTTCGTTCTTGTCCTTGTCATCTTAGTAACCCTTCCTAGATCTGCTATCAACCCAAGTTTAGCAGGATTAGCAGCCACATACGGTTTAAACTTAAACGTTCTTCAATCTTGGGTCATATGGAATCTATGCAATGTTGAGAACAAAATGATATCTGTTGAGAGAGTTCTTCAGTTCACAAACATAGCTTCTGAGGAGCCAGCGGTGGTTCATGATTGTAGGCCAATGCCAGAATGGCCAAAGGAGGGGAACATAGAACTTGAGGACCTTCATGTTCAATACCGTCCTAATCTTCCAATGGTTCTGAAAGGAATCACTTGTACCTTCCCTAAAAGGAAGAAGATTGGTGTTGTTGGCAGGACAGGAAGTGGCAAGTCCACGTTAATCCAAGCACTTTTTAGGATGGTTGAGCCCTTTGCAGGAAGGATACTCATTGATGGAGTTGATATTGCTAAAATGGGTCTGCATGATCTGAGGTCTAGGCTGGGTATCATTCCACAAGACCCAACATTGTTCAAAGGAACCATGAGAACAAATCTTGACCCTTTGCAGCAACATACTGATCAAGAAATATGGGAGGTCCTTCGGAAGTGTCGGTTCGCCGAGATCTTCAAAACGGATCAAACGGTTCTTGAAGCACCAGTTGCTGAAGGTGGAGAGAATTGGAGTGTTGGACAGCGGCAGCTTGTTTGCTTAGCTAGAGTGCTTCTTAAGAAGCGTAGGATTCTTGTTTTGGATGAGGCAACAGCTTCCATTGATACTGCGACAGAGAATATAATCCAAGAAACGATACGGGAGGAGACGAAAGGATGTACTGTTATCACCGTAGCTCATCGTATACCGACTGTTATCGACAATGATTTGGTTTTGGTTCTTGATGAAGGGAAGGTCATTGAGTACGACAAGCCATCTCGACTACTCGAGAATAGTTCTTCTTCGTTCTCAAAGTTGGTGGCGGAATTCTTGAGAAGATCATCATCCAATAGTCACTCTCAAACAGTGGAGGGTAGCTGA 4275 41.73 MDFASVIVNAVFIFAFSIWVLVHFRCGNPRLRNTAARGSKWLIRITIFSNAVLPFLYCGFAVYEYLNSKFVCWELAVSALTWSLAAAIAIYWRNDVYHEGKPWPMILIVWWVFSCFYGLGCLILFLLTHLKSMEIPRFLPKPTIVDCASFTLCLIICCTALTVSYSKNHNDLEKLLLQTENVCSSEDHGGFVSPGLWSQITFQWMNPLFKKGRVQKLELAHVPCVPQSETAEYASMLLEESIERTKIESSSLPKAIVLATWKPLVLTAIFAGVNTLASFMGPVLITNFVNYLLRKDDDSSNRDGLILAFFFFFAKTLESLTQRQCYFGTHRLGIQIRAALTVMIYKKCVSINAAGPSNGKITNLINVDVERIGDFSWYIHKIWLLPVQVVLALVILYMNLGLAPSITALLAIVFIMVGNTPLASIQESLHSKIMDAKDSRIKLTSETLRNMRVLKLHSWEQTFLKKILKLRDVERGWLKRYLYTCSVIAVLFWVSPTLVSVVTFGACVLMNVSLTAGTVLSAIATFRILQEPIYNLPELVSMIAQTKVSLDRIDEFIREEDQRKQIYYPPSSSSDIMVEIEVGEYSWDASDRNVKPTITVAEKMQIPKGYKVAVCGSVGSGKSSLLCSLLGEIPQISGTQMKVHGTKAYVPQTAWIQSGTVRENVLFGKEIDERFYGDVLEGCALDQDIKLWLDGDCTLLGERGLNLSGGQKQRVQLARAVYSDADVYFLDDPFSAVDACTGTHLFEASAIFLCFLVVMKNGHVVQSGKYAELISDSNGELARHIAAHRKSLNGVEPFKEDKPHLKPCQMEAQDENSSLTLGNGDLMRTQEEESQTGRVKWSVYSTFITSAYKGTLVPVVLLCQVFFQILQMGSNYWISWATEEEGKVSREQLIGIFVLMSGVSSVFILGRAIVMATIAIETAQRMFLGMVTSIFAAPISFFDVKPSSQILNRSSNDQSTLDTDIPYRLGGLAFALIQLLSIIILMSKVAWHVFPLFLVVLAISIWYQGYYISTARELARMVGIRKAPILHHFSETVIGATIIRCFNQEDRFLTKILELVDDHSRIVFHNSTSMEWLCLRINFLFDAVFVLVLVILVTLPRSAINPSLAGLAATYGLNLNVLQSWVIWNLCNVENKMISVERVLQFTNIASEEPAVVHDCRPMPEWPKEGNIELEDLHVQYRPNLPMVLKGITCTFPKRKKIGVVGRTGSGKSTLIQALFRMVEPFAGRILIDGVDIAKMGLHDLRSRLGIIPQDPTLFKGTMRTNLDPLQQHTDQEIWEVLRKCRFAEIFKTDQTVLEAPVAEGGENWSVGQRQLVCLARVLLKKRRILVLDEATASIDTATENIIQETIREETKGCTVITVAHRIPTVIDNDLVLVLDEGKVIEYDKPSRLLENSSSSFSKLVAEFLRRSSSNSHSQTVEGS 1424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3931604 3938789 + Cp4.1LG09g06160.1 Cpe09g00569 474935

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00569 1424 Gene3D - 602 802 IPR027417 -
Cpe09g00569 1424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 603 777 IPR027417 -
Cpe09g00569 1424 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 859 1135 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cpe09g00569 1424 SUPERFAMILY ABC transporter transmembrane region 858 1153 IPR036640 GO:0005524|GO:0016021
Cpe09g00569 1424 ProSitePatterns ABC transporters family signature. 707 721 IPR017871 GO:0005524
Cpe09g00569 1424 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1172 1406 IPR003439 GO:0005524
Cpe09g00569 1424 CDD ABCC_MRP_domain2 1170 1390 - -
Cpe09g00569 1424 Gene3D ABC transporter type 1, transmembrane domain 826 1153 IPR036640 GO:0005524|GO:0016021
Cpe09g00569 1424 Gene3D ABC transporter type 1, transmembrane domain 252 563 IPR036640 GO:0005524|GO:0016021
Cpe09g00569 1424 Pfam ABC transporter transmembrane region 266 532 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cpe09g00569 1424 Pfam ABC transporter transmembrane region 874 1099 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cpe09g00569 1424 SUPERFAMILY ABC transporter transmembrane region 260 561 IPR036640 GO:0005524|GO:0016021
Cpe09g00569 1424 Gene3D - 1155 1408 IPR027417 -
Cpe09g00569 1424 Pfam ABC transporter 604 734 IPR003439 GO:0005524
Cpe09g00569 1424 SMART AAA_5 608 792 IPR003593 -
Cpe09g00569 1424 SMART AAA_5 1198 1391 IPR003593 -
Cpe09g00569 1424 Pfam ABC transporter 1189 1337 IPR003439 GO:0005524
Cpe09g00569 1424 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 580 819 IPR003439 GO:0005524
Cpe09g00569 1424 CDD ABCC_MRP_domain1 578 762 - -
Cpe09g00569 1424 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 104 1415 - -
Cpe09g00569 1424 CDD ABC_6TM_ABCC_D2 857 1147 IPR044726 GO:0140359
Cpe09g00569 1424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1163 1398 IPR027417 -
Cpe09g00569 1424 CDD ABC_6TM_ABCC_D1 266 553 IPR044746 GO:0140359
Cpe09g00569 1424 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 265 545 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cpe09g00569 1424 PANTHER OS01G0902100 PROTEIN 104 1415 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00569 - - - csv:101219301 2299.63
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01598 Cpe09g00569 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01598 Cpe-Chr1:9756152 Cpe09g00569 Cpe-Chr9:3931604 3.00E-08 dispersed
Cpe09g00569 Cpe-Chr9:3931604 Cpe17g00963 Cpe-Chr17:7350788 0 dispersed
Cpe09g00568 Cpe-Chr9:3922949 Cpe09g00569 Cpe-Chr9:3931604 7.32E-12 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1141 . . . . . . . . Cmo04g01910 Cmo18g00707 . Cma18g00720 . Car18g00666 . Cpe09g00569 Cpe01g01598 Bhi07g01868 . . Lac13g0089 Hepe10g1543 . . Cla05g02633 . Cec05g2863 Cco05g2895 Clacu05g2831 Cmu05g2678 . . . . . Lsi04g00654 . . Cme10g00632 Blo06g00821 Blo11g00984 . . . . . . . . . Cma04g01814 . Car04g01826 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006115 0 1 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 3 2 1 1 2 1 1 1 1 1 2 3 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00569 Cpe_Chr09 FPKM 0.200135 0.179674 2.247292 2.465423 1.141471 0.831106 1.005241 4.95602 4.663054 4.254846