Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00570 ATGTCGAAGAATCTTAAGAGAATTTGTGGTGTTCTTGATCGTTGTAAACTATTTGCTTATTTTCATGTATCCTCTGAAAATTTTTCGTCTCCGCTGGAATCTTCCATTTCTATAAGAGCTAGAGATTTGCAGCAAATAGTTCAATCTGAATGTCAGACAAAGCTTTCTGATATTGATTTGATCATTTCCAAAGTTCGGGTTGGTCGCAGCGAGGATGAAGTTTTTCAGTCTCTCTTGCACGATCAAGCGTGTAACCGCATACACTTCTCCCATGAACTTGTTTACAAATTGCTCCAACGATTCAAAGATGATTGGAAGTCTGCATTGGGTGTTTTTAGATGGGCAGAGTCACTCTCTGGATTCAAGCACACACCGGATTTGTATGACGTTATTATAGATACATTGGGGAAAACAAAGCAAATGGTCAAGATGAAAGGTATGCTAGAAGAAATGAAGGAAGCTCAGCTCGTAACGCTTAATACTCTAGCTAAGGCTATGCGAAGGTTTGCCGGTGCTGGACAATGGGAAGATGCTGTGAGAATATTTGATGATTTGGGAACGTTTGGGTTGGAGAAGAACACTGAATCCATGAATGTGCTGCTTGATACTCTGTGCAAAGAGAAGAGGGTTGAACAAGCTCGACGGATATATTTGGATCTTAAGTCCCATATATCCCCAAATGCCAACACGTTCAACACGTTTATTCATGGTTGGTGTAAAGTCAATAGAGTTGACGAGGCACACTGGACGTTACAAGAAATGAAAGGACATGGTTATCGTCCTTGCGTCATTAGTTATTCAACGATTATCCTATTTTATTGTCGTCGTTGCAAGTTTAGTAAGGTTTATGAGTTGCTTGATGAAATGGATGCTCAAGGATGCCCTGCAAATGTCATCACTTACACTACTATCATGTGTTCACTAACAAAGTCAGAAGAATTTGAGGAAGCCTTGCAAATTGCTGAGAGAATGAAATCTGCTGGATGTGAACCCGATACGCTGTTTTATAATTGTTTGATCCATACATTAGGGAGAGCGGGTAAAGTACAGGAAGCTATTCATGTATTCGAAGTAGAAATGCCGAGCAAGAGTGTTTTGCCGAATACATCGACTTACAATTCTATGATTTCCATGTACTGTCATCGTGCGCAAGAACAGAAGGCTATGAAATTGCTTGAGGAGATGGAGAAATCAGGGCTTTGTAAACCTGATGTCCAGACATATTACCCATTGCTCAAATCCTGCTTTAGAACTGGAAAGACAGACAATGTTTTGAGCAAGTTGTTGGATGACATGATGAATAAACAGCATTTGAGTCTTGATATATCAACTTATTCCCTTTTAATTCATGGTCTTTGTAGATCAAATAAGTGCGAGTGGGCTTACCAGCTATTTGAGACGATGATCGGTCAAGATATAAAGCCGAGATACCTTACATGTAAACTGCTTCTGGATGAAGTTAAGCAGAAGAACATGGATGAAGTTGCTGAGAGGATTGAAGATATCATGAAGAAATTGTGA 1521 39.71 MSKNLKRICGVLDRCKLFAYFHVSSENFSSPLESSISIRARDLQQIVQSECQTKLSDIDLIISKVRVGRSEDEVFQSLLHDQACNRIHFSHELVYKLLQRFKDDWKSALGVFRWAESLSGFKHTPDLYDVIIDTLGKTKQMVKMKGMLEEMKEAQLVTLNTLAKAMRRFAGAGQWEDAVRIFDDLGTFGLEKNTESMNVLLDTLCKEKRVEQARRIYLDLKSHISPNANTFNTFIHGWCKVNRVDEAHWTLQEMKGHGYRPCVISYSTIILFYCRRCKFSKVYELLDEMDAQGCPANVITYTTIMCSLTKSEEFEEALQIAERMKSAGCEPDTLFYNCLIHTLGRAGKVQEAIHVFEVEMPSKSVLPNTSTYNSMISMYCHRAQEQKAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTGKTDNVLSKLLDDMMNKQHLSLDISTYSLLIHGLCRSNKCEWAYQLFETMIGQDIKPRYLTCKLLLDEVKQKNMDEVAERIEDIMKKL 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3939953 3942039 + Cp4.1LG09g06110.1 Cpe09g00570 474936

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00570 506 SUPERFAMILY TPR-like 172 475 IPR011990 GO:0005515
Cpe09g00570 506 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 332 367 IPR002885 -
Cpe09g00570 506 Pfam Pentatricopeptide repeat domain 285 344 IPR002885 -
Cpe09g00570 506 Gene3D Tetratricopeptide repeat domain 291 359 IPR011990 GO:0005515
Cpe09g00570 506 Gene3D Tetratricopeptide repeat domain 69 221 IPR011990 GO:0005515
Cpe09g00570 506 Gene3D Tetratricopeptide repeat domain 222 290 IPR011990 GO:0005515
Cpe09g00570 506 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Cpe09g00570 506 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Cpe09g00570 506 Gene3D Tetratricopeptide repeat domain 360 506 IPR011990 GO:0005515
Cpe09g00570 506 Pfam PPR repeat 128 154 IPR002885 -
Cpe09g00570 506 PANTHER OS02G0601600 PROTEIN 14 506 - -
Cpe09g00570 506 TIGRFAM PPR: pentatricopeptide repeat domain 371 404 IPR002885 -
Cpe09g00570 506 TIGRFAM PPR: pentatricopeptide repeat domain 230 261 IPR002885 -
Cpe09g00570 506 TIGRFAM PPR: pentatricopeptide repeat domain 299 333 IPR002885 -
Cpe09g00570 506 TIGRFAM PPR: pentatricopeptide repeat domain 444 475 IPR002885 -
Cpe09g00570 506 TIGRFAM PPR: pentatricopeptide repeat domain 336 369 IPR002885 -
Cpe09g00570 506 TIGRFAM PPR: pentatricopeptide repeat domain 264 297 IPR002885 -
Cpe09g00570 506 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 441 475 IPR002885 -
Cpe09g00570 506 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 331 IPR002885 -
Cpe09g00570 506 Pfam PPR repeat family 367 416 IPR002885 -
Cpe09g00570 506 Pfam PPR repeat family 192 240 IPR002885 -
Cpe09g00570 506 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 14 506 - -
Cpe09g00570 506 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 261 IPR002885 -
Cpe09g00570 506 Pfam PPR repeat 438 468 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00570 - - - csv:101208612 859.751
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00570 Cpe-Chr9:3939953 Cpe20g00222 Cpe-Chr20:1259926 5.21E-16 dispersed
Cpe09g00570 Cpe-Chr9:3939953 Cpe02g00435 Cpe-Chr2:2447566 2.20E-51 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1144 . . . . . Bpe10g00778 . Bma15g00243 . . . . . Car18g00665 Sed06g0134 Cpe09g00570 . Bhi07g01872 Tan04g0097 Cmetu10g0012 Lac13g0085 Hepe10g1542 . . Cla05g02634 Cam05g2827 . Cco05g2896 Clacu05g2832 Cmu05g2679 Cre05g2795 . Cone19ag1108 . . Lsi04g00655 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011749 1 1 0 2 1 0 2 1 1 1 1 1 1 0 1 1 1 3 1 0 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00570 Cpe_Chr09 FPKM 1.180456 0.902745 5.106264 5.539254 15.683645 14.145477 16.395723 0.590018 0.50288 0.685137